MmuINT0117745 @ mm9
Intron Retention
Gene
ENSMUSG00000028073 | Pear1
Description
platelet endothelial aggregation receptor 1 [Source:MGI Symbol;Acc:MGI:1920432]
Coordinates
chr3:87560771-87561186:-
Coord C1 exon
chr3:87561066-87561186
Coord A exon
chr3:87560908-87561065
Coord C2 exon
chr3:87560771-87560907
Length
158 bp
Sequences
Splice sites
5' ss Seq
ATGGTATGA
5' ss Score
6.56
3' ss Seq
CTTTCACCCCCTACCCCCAGGGT
3' ss Score
10.22
Exon sequences
Seq C1 exon
CTGTAATGTGCCCTGTTCACAGGGCACTGATGGCTTCTTCTGCCCCAGAACCTATCCTTGCCAAAATGGAGGTGTTCCTCAGGGCTCCCAAGGCTCCTGCAGCTGCCCACCGGGCTGGATG
Seq A exon
GTATGAAGGGCAGGAGGCTGCGTGCATAGGGCTGGGATTCCCAGGAGAATTCTGAGGGTGGTTCTCCACAGGAATGATGGACACTTAGGAACCTGGAGAGGTCTGAGCGTCTGTGGTCATGAGAAGGGAATTAAGTGACTTTCACCCCCTACCCCCAG
Seq C2 exon
GGTGTCATTTGTTCCCTGCCATGCCCAGAGGGTTTCCATGGACCCAACTGTACTCAGGAATGTCGCTGCCACAACGGTGGCCTCTGTGACAGGTTTACTGGGCAGTGCCACTGTGCTCCTGGCTATATCGGGGATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028073-Pear1:NM_152799:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126612=hEGF=PU(61.5=19.5)
A:
NA
C2:
PF126612=hEGF=PD(23.1=6.5),PF126612=hEGF=PU(84.6=23.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTAATGTGCCCTGTTCACAG
R:
ATCCCCGATATAGCCAGGAGC
Band lengths:
256-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: