RnoINT0109570 @ rn6
Intron Retention
Gene
ENSRNOG00000014243 | Pear1
Description
platelet endothelial aggregation receptor 1 [Source:RGD Symbol;Acc:1305653]
Coordinates
chr2:187121935-187122378:-
Coord C1 exon
chr2:187122258-187122378
Coord A exon
chr2:187122072-187122257
Coord C2 exon
chr2:187121935-187122071
Length
186 bp
Sequences
Splice sites
5' ss Seq
ATGGTATGA
5' ss Score
6.56
3' ss Seq
TTTTCACCCTCTCCCCACAGGGT
3' ss Score
13.54
Exon sequences
Seq C1 exon
CTGTAATGTGCCCTGTTCACAGGGCACTGATGGCTTCTTCTGCCCCAGAACTTATCCTTGCCAAAATGGAGGTGTTCCTCAGGGCTCTCAAGGCTCCTGCAGCTGCCCACCGGGCTGGATG
Seq A exon
GTATGAAGGGTGGGGCCTGTGTGCATGGGGTTGGGATTCCCAAGAGAACTCTGAGGGTGGTTCTCCACAGGGCTACAGGCCAGTGCTTTCTTGGGACAGGCACTCAGGACCCTGGAGAGGTCTGAGCGCCTGTGAGCCTGTGGTCATGAGAAGGGGGTTAAGTGACTTTTCACCCTCTCCCCACAG
Seq C2 exon
GGTGTCATCTGTTCCCTGCCATGCCCAGAGGGTTTCCACGGACCCAACTGTACTCAGGAATGTCGTTGCCACAATGGTGGCCTTTGTGACAGGTTTACTGGGCAGTGCCACTGTGCTCCTGGCTATATCGGGGATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014243:ENSRNOT00000019502:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF126612=hEGF=PU(84.6=23.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTAATGTGCCCTGTTCACAG
R:
ATCCCCGATATAGCCAGGAGC
Band lengths:
256-442
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]