DreINT0095297 @ danRer10
Intron Retention
Gene
ENSDARG00000019715 | metap1d
Description
methionyl aminopeptidase type 1D (mitochondrial) [Source:ZFIN;Acc:ZDB-GENE-050522-71]
Coordinates
chr1:30158599-30158913:+
Coord C1 exon
chr1:30158599-30158641
Coord A exon
chr1:30158642-30158749
Coord C2 exon
chr1:30158750-30158913
Length
108 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGG
5' ss Score
5.42
3' ss Seq
AGTCAATATGTATTCTGTAGGTT
3' ss Score
5.32
Exon sequences
Seq C1 exon
TCGGCCATTGCAGGATGGTGATATCATCAATATTGATGTCACA
Seq A exon
GTAAGGCCTTTCCTTAAATTGTTAGTCTTTTATTTGTTGTTAGAACTCAGTAAGGATATTATTTATGCATGTCCTTATCAGCTAAAATAGTCAATATGTATTCTGTAG
Seq C2 exon
GTTTATCTGGAAGGTTACCATGGTGACACCTCAGAGACATTTCTGATTGGCTCAGTCAACGACCAGGGCAGGAAATTAGTGGATGTGGCTCGTCAATGCAGAGATCAAGCCATCGCCGCCTGTGGCCCGGGACAACCTTTGTGCGTCATTGGCAACATCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019715:ENSDART00000022841:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0055719=Peptidase_M24=FE(6.1=100)
A:
NA
C2:
PF0055719=Peptidase_M24=PD(11.1=56.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCATTGCAGGATGGTGATA
R:
ATGATGTTGCCAATGACGCAC
Band lengths:
202-310
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]