GgaINT0047908 @ galGal3
Intron Retention
Gene
ENSGALG00000009513 | F1P5C7_CHICK
Description
NA
Coordinates
chr7:19257286-19260905:-
Coord C1 exon
chr7:19260863-19260905
Coord A exon
chr7:19257450-19260862
Coord C2 exon
chr7:19257286-19257449
Length
3413 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
3' ss Seq
ACATTTCTGCATGTGTTTAGGTG
3' ss Score
8.07
Exon sequences
Seq C1 exon
TCGACCTCTTCAGGATGGAGATATTATCAACATTGATGTCACG
Seq A exon
GTGAGTAATTCACATAAAAAATAGTCTTTGATCAACTTTAGAGTTCCTGGTAGCAACAGGAAGAATAGTGGATGGGAGATGGGGAGCGCACAGATGGATGTGCTGTTTACTTCTAAGGCAAGGCACAAGCAGCTGGTTTCCTTTTTTGTTTTTAACTGTGTGTTTATTCCAGCTAGACCCAGGCCTGACTTGAATTTAGGACTGGAATCAGATGCACTGAGATCAATGTTGGCCTAAGTGAAATGTCAACCCAATCCTGCTATGTGTCATGTTTCTGAGAAGGTGTAATTGTTATTGATCCACTGTGTAGTTAATGCAGAGCACCGCAGTACTGGGCAGCAGCTGAAGATAGATATGTATGAGATGAGCTAACATGAAGAAAGCCAGCATTTTTCCTTCACTCTGCCAAGATTGATCTTCCTCTTCCTGCTGATTTTGAGTGGGGCCTGTCATTATCTTACTCTGTCATTAGAGGCTACATTGGCCTGTGTATGTCAGTCTATTTGGACAGCAACTCTTTTGCTAGCAGTGTTCCCTACATTTATTAAAATCCCCGAAGGTAGTGTTGTGTTCCATTTCTGGTATAAAAGCCCTGAACCTTTTGCACAGAAACAGAAATAGTGTGATATAACTGTGACTTAATATTTCCAGAGAATGGTCAATTACAGCTACTTAAATAAACACCAGCTGGATTTTTGTGGGAGCAGGAAAATACAGAAACTGGGAACTTAATTCTCGTTTCATATAGGCAGCACAATGTATTTGTGTCTTGCAGAAGCTTTTTGTCTTTTCGCTGCACATGTTTTTATTTTCCCAAAGTGGTGTTTATTTTTAATACGGACACAGATGTCTTTTGAATTCTGGCATTATTTTCTAATATCTGACATACAAAGGAGTACCATAGGAATGAGATTTTTTTAATCATTAAAATTTTCTTGGGCCCAAATTTCATACTGGTAGAAGTGAAGAAATTTCAGTTGTGCTTACCTCTGAGCATGAGATTCCAGCTTCTAAATCACTTTTCCTACAAACACTGGGGTCACTGACCTTTTCCCATGCTATACGTCTGATCCAGAACTGCGTTGTTCTGGGGATTTTTTTCCTTGTCATTTCTTCCCCATCTCCGTAATTCCTAATTGTAGAATTCTGACTACCAGCTTCACACAGTGTGATCTTTCATTTTTACAGTATATTTTGGGCCTAATGTTTTTTTTACTGTGGTGAACTGGTGTAGCTTTGCTCATTTTACTAGACCAAATTAGCTTGCAACAGCCAAGGATTTAACATCTCATTTCTTTGTAACTCATTAAGGTTCATTCGGTTTTTTTTTTGTTGTGTTATTTCATCTGTCGGGATAATAACAGCAACTCCTTAGATTTAGAAAAAAAACACAACTGTTCAGATTCATATCACAGATCCTTTCCATGATATACTAACTCAGATATTTTTATATTAACGTGGAATATGCATCTTTTCCACCCTGCTTTACAAAAGATGTACAACCAAATATTAGTGGTCTTTTGGAAAATACATTCTTACTGTGTTCTGTTTACCCTCAAAAAAACAAAATAAATCTCGAAGTTCCCATGAAGGTGAAGATTCCTGCAAGGGTAGGAATTGCTAATTGTCTTTGAAAACATTTTATATCGTATGAAACGGAACTGTGCTGTGTTTGAGCACTGTTCAGTTCCAAACAATTTAAGGAAGAAATATTACTTTGCAGTGTTGCTAATTGATCTTTTAATTTATTTTTAACGAGCACAATTGGGATGTTTCACAGGGCAAAGGTGTAAAAATCAAAGTAAATATGCCTCAACAAATTGTTTATAATTGCATACAGGTTCTATAAAATGATTAAATAATATTCTGGTTATTAACTAGAAACACTTGGCACGACATACAAATTATTTGAAGAAAAAAATCTATTTTTGCGCAATTAAGATGGTAGAATTTCATAGGTGAAATACAAATTTTATTGGCTTCATCGTGTAGCCTTTAGAATGTATTTAAGTGCAGAAACAGAAGCATTGTGCATCACTGAACTGTCAGCATTGCACAATTTCCAGCCAGCTATTGGCAGGTAAAGCTTCTTACAACTCAAATCTTTCATTGACTTTTAAGGAATTAGTGTGTTACGGTTGCTGTGGTTGTAGTTTATTAATGTTAAAAATACATAATTGCAGTTGATGGCCGGCAGTAAATGCAATTATTTTTAAGCTCTGCTGTGTTTTAAATCTGTACTCATTTCTCCGGGATGGTGAAGTGTAATGTTTTTGTTCGGTTTTTAAGTGCCGTAGTTGCTAGAGCTACAACTCAAGTCATTTGGCTTACATACGGACTAGCTGGAGTGAAACCTCTCCAGCAGGCATTAAATTGTAAAAGCAGATCTAGCAGCAGCTCCAGCTGGCAGAGGGAGGTGTGCGCCGGGAGGACTGCAAAGTTGGATCCTCGCTGCCATTCACTGTCCTGTGCAGTGCTGTGCACCGGCAGCTGCCTGCATTTTCTTTACATCTCCCCCCCAACACAAACCTGGCCCTGAGATAAACCGTCTGTAGCCAATTTATTTTTTTTTCCATTTGCAATTGACCAAAAGGAATGCGAGTCTGTGTCTTTCACAAATAGCTCGCGAGTGGCAAAAGTTCAGTGCTTCAGTCTTGATGAGTCATTAGTCCCAGGAGGATAGTTGCCCACTGTTTGGGGAAAAAAATGTTTTAGGAGATCAAAACTGTGCCCCATTACAATTTGTCTTTTGGTAGGGAAATTTGGCTTGCTCCCACAGTTGTGTCCCTCCTGCCGTACTACAGAGCTGCAAAACCCATTTCCACACAGTGCTGCGGCGCTCTGCCCAAGAGGAAACTTCAGGAGAGCTGAGGCTTTCAGCCTATAAAATGTCAAACAAACAAACAGAAAGCCAGCAGGTCATTAGTACAACAGGTCGCTGTGCCTTCTGCCTGAGCAGAACCCCACCGTACTGGCACGGGGACGTTCCCTGTGGAGGGATGGGTCTCCCAACCATTGCTGATGGGTTGGCAGCTCTCCCCATCCCAGCCCAGGACCCCTTTTGCACTGAGTGACCCCATGGCCCCCTCCTAGCTTCTGGCATGCTCCTGTCCCCTAGCTGAGCAGCGTCACCTGTGTTTCCTCCTGTGCTCTTCTAGGCAGCCATGCACAACTTCTGCATTTGTCGAGTTTTTAATTGGTAACCCTTATGTACCCTGCAGTCTTTCGTGCTTTTTTTTTTTTCCCTCCCTCTGGTGTTGTGCTTTTTCTGGTCTCATTCTTGCACGTGCAGCCTACCAGTGACCTATCTGTTGCAGTACATAGATCGTTCCTAGAAAGAACGGATTTAGTTTAGGTGATCTGTTTCTGGATGCAAAACAAGAAACTGTCTTTACATTTCTGCATGTGTTTAG
Seq C2 exon
GTGTATTACAATGGCTACCATGGTGACACTTCTGAAACCTTTTTGGTGGGCAGTGTGGATAAATCTGGTCAAAAGTTAGTGGAGGTTGCCAGGAAATGTAGAGATGAAGCAATTGCAGCTTGCAGACCAGGGGCTCCCTTCTCTGTAATTGGAAACACAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009513:ENSGALT00000015487:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0055719=Peptidase_M24=FE(6.1=100)
A:
NA
C2:
PF0055719=Peptidase_M24=FE(23.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]