DreINT0095300 @ danRer10
Intron Retention
Gene
ENSDARG00000019715 | metap1d
Description
methionyl aminopeptidase type 1D (mitochondrial) [Source:ZFIN;Acc:ZDB-GENE-050522-71]
Coordinates
chr1:30162454-30162679:+
Coord C1 exon
chr1:30162454-30162501
Coord A exon
chr1:30162502-30162600
Coord C2 exon
chr1:30162601-30162679
Length
99 bp
Sequences
Splice sites
5' ss Seq
TAGGTCTGT
5' ss Score
3.44
3' ss Seq
CCATCATGCTTTTATTTCAGAAC
3' ss Score
9
Exon sequences
Seq C1 exon
CTAATGACAATGACCTCAAGATGGAAGAAGGCATGTCCTTCACCATAG
Seq A exon
GTCTGTGTGAACTCACATTTCACTTTACAGAGTTCTCATCAATAGAAGCATGAATTTGCACCATTTTTGGCACATTTAACCATCATGCTTTTATTTCAG
Seq C2 exon
AACCTATTCTTATGGAGGGAACGTCAGAATTCAGGATCCTGAGTGACAAGTGGACTGCTGTGTCTGTGGACGACAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019715:ENSDART00000022841:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.118 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0055719=Peptidase_M24=FE(7.0=100)
A:
NA
C2:
PF0055719=Peptidase_M24=FE(11.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAATGACAATGACCTCAAGATGGA
R:
CTTTTGTCGTCCACAGACACA
Band lengths:
127-226
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]