GgaINT0047911 @ galGal4
Intron Retention
Gene
ENSGALG00000009513 | METAP1D
Description
methionyl aminopeptidase type 1D (mitochondrial) [Source:HGNC Symbol;Acc:HGNC:32583]
Coordinates
chr7:17342360-17343261:-
Coord C1 exon
chr7:17343214-17343261
Coord A exon
chr7:17342439-17343213
Coord C2 exon
chr7:17342360-17342438
Length
775 bp
Sequences
Splice sites
5' ss Seq
TAGGTTAGT
5' ss Score
5.5
3' ss Seq
GCGTTTTTTTCTTGTTCCAGAGC
3' ss Score
9.79
Exon sequences
Seq C1 exon
CCAATGACAGTGATTTGTTAATGGAGGAGGGAATGGCGTTCACAATAG
Seq A exon
GTTAGTAAATGTATTCTGTGTTTGTCTTTAAAAAAGCACACACACAACAACCCAGCTCCGTGCCGTTTCTCTGAGTAGAGAAATGTCCCCTCAGAAACGGGGACGGCGGCGACGCTGGCCCCTGGGAAAGAGATTCAAGTGTTATTCTAACAAATGCACTGGGGGATCAGTTGGGCGACACAGCTCCCGAGTGACACGAATTTGGAAAGGAAAAATCTGAACGTAAATCTCATTAAGCGGCGGACCTGACGCGTCGTTTTGGCAGCGCGGCTGCGGCGGTGTGCGGACAGACAGCAGAGCGCGGCTGTGTCCCGCTGCCCGCTGCGGGCAGAGCTGCTCCGGGCCGGGCCGGCCGTGCGGGGTTCGTGAGAGCCGCCCCACAACGCGAGTGCGCGGAGTGCAGCGCCGGTGCCGGGGACGGAAGCCCCTTCCTCCCACCGCGGCAATTAGAGCCGAATCACAAAATCGTTGTTGTGCTGATTGAGTTGAACGTTTTAAGTCGGTCTGCTTTTTAAATCAGATACGTTGAACTATCCGCTGCTTGTAAGCGCGTTTGGGGTTCTGATTATTACCACGGAGTCTTAAGGAAAGCTCGAATAAAATCCCCTTCTGTTACAAAAGCGGAGCGGGCGCCTTCCCCACACCGCAGCGCTGCGTCCCCCTCCGGTGCGGCCCCGGTGGGGCAGCGCGGTGCGGAGCGCGGCTGGGAGCTGCCGCCGGGCCCCCCCTGCCCGCAGCAGCGCCGCTCACAACGGGCGTTTTTTTCTTGTTCCAG
Seq C2 exon
AGCCAATAATAATGGAGGGCTCCCCCGAATTTAAGATTCTGAAGGACAAATGGACCGCAATTTCGGTAGACAATAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009513:ENSGALT00000015487:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0055719=Peptidase_M24=FE(7.0=100)
A:
NA
C2:
PF0055719=Peptidase_M24=FE(11.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]