DreINT0096827 @ danRer10
Intron Retention
Gene
ENSDARG00000017676 | mmp2
Description
matrix metallopeptidase 2 [Source:ZFIN;Acc:ZDB-GENE-030131-9123]
Coordinates
chr7:35143302-35146433:-
Coord C1 exon
chr7:35146297-35146433
Coord A exon
chr7:35143462-35146296
Coord C2 exon
chr7:35143302-35143461
Length
2835 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
3' ss Seq
TAAACTTTTTGCTTTTGTAGGTG
3' ss Score
9.86
Exon sequences
Seq C1 exon
ATTCCTCTTTAGGACGGCTGATGTCAGGAAAAAGCCGACAGGCCCCATGCTGGTTGCCACGTTCTGGAGTGAACTACCGGAGAAAATTGATGCAGCTTATGAAAACCCTCTGGAAGAGAGGACTGTCTTTTTTGCTG
Seq A exon
GTAAGCTACAGTATGCTCCTTATTTTCCCAAGGGCAGAAAAAAAGAACCTGGTGTGACACTTTTTTTCAGGTTTAAATATAATGATAATAGGGCGTACTCACACTATGTACAGTGGCCTTGAACCGGGCCAAAGCACGCTTGTCCCCCCTCGTGATTATGCACTGTTCTGTAGAGAAGCCCTCTCGCTCAGCACAGTGGAGATTTCTCTAGTTATATTGTTTTAGTCGTTTGGGATGCGGTGGCATACAGTCAAATATTTCGCCGAAAAGATAAGCCACTTTTAACGCTCATGAACAGTCATAAAGTCCTCGTGCTGCAGGAATTAGGAGGTTTGCTGAAGGTGCAGCTATGAGGAGTTCGTATCTTTAATAAACTTCGACAGTTTGCATTCATTGAACGGTAGGAATAATTGATAAGTCCATATGAAACAGTCCTTTAAAAGTCATGTCTTGCTTTCAGTTTTGGGCTATGGTGCATTTGCACTCACACACAAGCGTACCGCGCCAAAGCCCGCGTGAACCGCGCTCAGGCACACCTCTTCCAACTGGACCAGGGCCAGCCAAGTGAATCGTACCTGAGCCCGAATTAGCACACTCACACTTCTCAAACGATCTGGGAAACGGGCCCGGGCATGGTTCGGATAGCATAGTGTGAGTACGCCCTTGCTCTTAGTATTTTCTGTACTAATACTAATTTGAGATGAACAATGTTAAAGGGAACATATCATGCAAAATTGTTTAAAACACATTTGTGTAGCAAGATTGTGTGAATATAGCCAGCCTCGAATTGGATAATTTCATTAATTTGATTTAATATAATCACCCTTAATAAAAATAGTCTGCAAGAAACACGTTGATTGACATTCTCCCTTTGTACATGTCATCAGAGGCAGAAAACCCCACCCATTAGTGACGATCTCTGCCCCATAAGCATTGACAGCCCTGAATTAGAAGTAGCCATCCACCATTAGAGTTTTCACACTGTTCCTGCTGAAGATTATGTCAGTGACTAAGAGCTATTATAAATGTGCTGTTTTAGGATACACAAATTAACATCAGAGTCTCCATAGATGACCATCTTCTGAGGCTCTTTTTTTCACAAAAATAACATTAGTCCTGTTTTAAATTTGCCTCTATGCTAACACATAGGTGTTTGTAGCTCCGCCCACCAGCATGGAACAATTTGGATCAGTCTAAAAGGGGCAGTTTTAAAGATTCATAAAAAATATTTGTGAATTATTTTGAGCTGAAACTTCACACCCACACTTAGGCACATCAGAGACATATTTTAAATCTTGTAAAAAGAGGCAAAATAGGTGCCCTTTAAAGGTGAAGAAAAGAATATGTATTTTTTACGACCTGGTATGGATTAAATCTTGTGATGAATAAGTCTTGACAATGCCTTTTAGGCACGAGCTGGTATAAGTTTCTGACGGTATGATAACCTTGGAAAATAATACCTTGGTTTCATGGTATCACAGTATTGTGATAAAATAATATTCTTTTTAAATGTCTTTAAATAAAAAATATTTTAAAAAATCCTCATTGAACACAATTTATTTTATTTTAGAAAACATTTATATATTTTGGAGCAGTAAACATGTCAGGCTAAATAATTTAAATAAATCATAGACTTCTGCTCTCTTCATTAGTTTCAAAAATATTGATTTCTTTACAACACATAAATACATTAAAAAACACTTACATATACCTTAGAAATGGTATAACAGAACATTTTAGAGGTATTAAACCCTTGACCTAAATACCTAAAGTATTGATATCAATGATTTTAAATGTAAAAGGGATGTAGCGGAAAAAAGGCATGTTGTATGTTTATGAGAGTACAATTGTCACTTCCTTGGAAATTACTGTAATATATTGATAACACAAATCACTGGAAACCACTTTGGCTCTTTTAGTTTCTGTTTTTTTTTTTTCTCCACAGTAACCGAGTTTGCACATGCACGCGCAATAACACACTCTGTAGTGTTATCTTGAGTTTGGAGGCAGTGTCTGATTTTTATGAACTTTTTATGTGAGACAGTCATACCAGTTATACAATCACATATTCTGTAAAATCACATTACTTTTTTTGTTGTACATCAGGAAATGTATTTGATTAATGTGATTTCGTCTTAGTTTTGGGACATGTGCTTATTGCATAAAAAATTGTCTGAATAAATTGAGAGTATGCATTTTTAAAGTGCATCTCTAAAATGTATGCACATCTAGGTTTCAAACCACTATGTGTATGCAATATTCTGAAAAAGCAAATAAGCAAATCCTGTTCACTACCCCAATTTGCAAAAATATCAAATTTAATAACAACGTTCGTTCACATGACCTTTATCAGGCATCATACAGGATGTAGTAAACTTAATTACTTTGAAATGAAATCATGACCAATCACTGCTAATAATAATTTATAATAAATAACATTCATTTACACGATATGTATATGCAAAAATCCTGTGCACATAGAACATAAATGCATTTAAATAAATAAATTAAATGCAAGATTTTAAAATGTGCATAAGTACATGTAAACACTAGTAAATTACTTGAAATTGCTAAATGTTACTTATTTTTACAGCTGTTGTTTTACGTATTACCTATTTTCCACCCTGTGTTTATGGGATTTAATATTTATTGCCATTGGACAATGAAGATTTGTCTGTGTTCCTCCCAATTTCTCATATGCATAAAACCTTTATTTATCAGTAGTGTATATGAGGAAGCAAGGTTTTGATTTTTGTTTAAAAATATTGTAGAAATGAATTTGTCTTTGCACGTGTCCTCCAACAGAAATGTGTATTAAACTTTTTGCTTTTGTAG
Seq C2 exon
GTGATGAGATGTGGGTATATTCTGCCAGTACCCTGGAAAGAGAATATCCCAAGAAAATCTCCAGCATGGGTCTTCCTTCAGATTTACATGGGATTGATGCTGCTTACTCCTTCCACAAGACCAAGAAGACTTACATATTTGCTGGGAACAAGTTCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017676:ENSDART00000026712:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0004514=Hemopexin=PD(61.4=57.4),PF0004514=Hemopexin=PU(38.6=36.2)
A:
NA
C2:
PF0004514=Hemopexin=PD(59.1=48.1),PF0004514=Hemopexin=PU(45.8=40.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]