MmuINT0099654 @ mm10
Intron Retention
Gene
ENSMUSG00000031740 | Mmp2
Description
matrix metallopeptidase 2 [Source:MGI Symbol;Acc:MGI:97009]
Coordinates
chr8:92843820-92846240:+
Coord C1 exon
chr8:92843820-92843956
Coord A exon
chr8:92843957-92846080
Coord C2 exon
chr8:92846081-92846240
Length
2124 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
TCTTCTGTCCCTTCCCTCAGGGA
3' ss Score
12.87
Exon sequences
Seq C1 exon
GTTTATTTGGCGGACAGTGACACCACGTGACAAGCCCACAGGTCCCTTGCTGGTGGCCACATTCTGGCCTGAGCTCCCAGAAAAGATTGACGCTGTGTATGAGGCCCCACAGGAGGAGAAGGCTGTGTTCTTCGCAG
Seq A exon
GTATGTAGGAGGGTCTCGCTGGCCCTCAGTTTCTGTTTAACTGGATCCACTTCTCCACCAAACCACAGTTCTCAGGCACCTGCAGGTACTGCAGCTCCATTAGGGACCTGCCTCAACATCACTCCCCAAAGCACAGTGTCTTTGTTAGGGTTTCTGTTGTGTTAAAACACCAGGTTCAAAAGTAACTCGAGGAAGCAAGGGCTTAATTCAGCCTACAGTTGTACGCAGGAACCCAAGGCAGGAACTGAAGCAGAAGCCATAGATGAGCTCTGAACACTGGCTTGCTCCCCACTGCTTACTCAGCCTGCTTTCTTATGCACTCCAGGACCATCTGCTCAGAAGTGGCATCACCCACAGTGGGCTGGCGCCTCCCACATTGATCACTGATTAAGAAAATGGCCCACAGGTTTGCCTAGAGGCCAATTTTATTGAGGCATTTTATTTTTGCAATTGAGTCCCCCTTCTCAGATAACTCTAGCTTCTGTCAAGTTGACAAAAGGAAAAAAAAAACCTAGCCAACACACCTTAGATTTATCTAGCATATTTTATTTCTGCTAGGCACCCAGCATCCACCAGCCTCACCCCTAGGACAAACATTTCCTCTCCTCTGGGCTCTTTGTTGATCTTTGTTTCCTTTCCTCTAAGAAAATAGAAGTTCCTTTCAGTGCTGATATTTCCCTAACAACTTTCCAGGGCTAGAGGCTTAGTCAGTAGCTACCTTAGTTAGACCTTTAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCATGTGTGTCTGTCTCTCTCTGTCTCTGTTTCTGTATGTATGCGTATGTGTATATGTCTGAGTATGTGAGTCTCTTTCTCTGTCTCTCTCTGTTTCTCTTTCTCTCTTCATATCACTGTCTCTCTCTGTCTCTGTCTCTCTCTGTGTGTGCATGCATGTATGTTTGTGTGTGTATGTGTGTTGGGGTGTGGCCATGAGTGAAGGTGTTCACAGAGGCTAGAGGCATTGATTCCCCCTGGAACTGGAGTTACAGGCATGTCTTAGGGTTTTTATAGCTTTGATAAAGCACCATGGCTGAAAGTACCTTAGGAAAGGAAGGGTATATTTGATCTTATATCCCACCATCCAGGGAAGTCAGGGCAGGAACTCAAGGCAAGTACCTGGAGGCAGAGGTTGTAAGCCACCCACATGGGTAACTTGGAATCTAACTCCAGTCTTTAAGAATAGGAAGCAGTCACAGTCACACCATTTCTTCAGCCCCCAGCGGTGGGTGCCTCAAGTTTAACATAAAATGTTTTGTTTAAACATGTATCGGTTTGAATAGAGCGTGGTGTCTGAAACCTGGATACAAACAAACTTTTATACAAGGTGTCTAGAATCCAAAGACGCATAACCTGGCGTCTAGATCCCAAAGAAGCACCACTTTATGAGGCTTGTTACTTCTATCTTTGTTTTCAGACAGGGTTTTATCAGACAACTCAGGCTGGCCTTTGCATTTGCTGTGTAGCCCAGGCTGGCCTTGAAGGCTCAGCTAACTTACTGTCTCATATACAGGCAGCTTTCATCTCCATCCTTTGGTGACCATAGGTTCTGGCCAAGTGAGCTTTGGCTCTCAGGGCACTTTGTCCAAGTGGGAAAGAGGGGCTTCTTGTGGTTGCTATGACATGTGCATTGGCTGCTTATCTTCCACATCGCCTCCCTTGACTGTCACCTTTTACCACCAACTTGTAAAACCCTGTGCACATGAGTTGGGGATGCAACTCAGTTGGTAGAATACTTGCCTAACATGCACAAAGCCCTGGGCTTCGGTTCTCAGCCCTATAGAAGTCAGGGGTGGGGGAGTCTGCCTCCCTGTAATCCCTCAGGAGAATGAGGTAGGGATGATGAGATGTTCGAGGCCAGCCTGGGTTACATGAGCTCATCTCAAAAGAAAGTGAAATAAAACGTGATCCTGTGCTCGAGGCCTGCCTCTAGGGTCAAAGCTGGGATCTGAGCAGAAGGTCACACCCGGTTGAGAAAGACCAAGCAGGCTCTTCTGTCAGAGAGATGACAGGAGGGCCAGGTTGGCCGGAGGTATTTCCCGACAGCCACCAGCTCATCTTCTGTCCCTTCCCTCAG
Seq C2 exon
GGAATGAGTACTGGGTCTATTCTGCTAGTACTCTGGAGCGAGGATACCCCAAGCCACTGACCAGCCTGGGGTTGCCCCCTGATGTCCAGCAAGTAGATGCTGCCTTTAACTGGAGTAAGAACAAGAAGACATACATCTTTGCAGGAGACAAGTTCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031740:ENSMUST00000034187:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0004514=Hemopexin=PD(61.4=57.4),PF0004514=Hemopexin=PU(38.6=36.2)
A:
NA
C2:
PF0004514=Hemopexin=PD(59.1=48.1),PF0004514=Hemopexin=PU(45.8=40.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types