DreINT0099029 @ danRer10
Intron Retention
Gene
ENSDARG00000078994 | muc2.2
Description
mucin 2.2, oligomeric mucus/gel-forming [Source:ZFIN;Acc:ZDB-GENE-120904-1]
Coordinates
chr25:8244463-8246961:+
Coord C1 exon
chr25:8244463-8244589
Coord A exon
chr25:8244590-8246705
Coord C2 exon
chr25:8246706-8246961
Length
2116 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
3' ss Seq
CTTGAAACTGATCCCCACAGGCA
3' ss Score
5.19
Exon sequences
Seq C1 exon
AGATGCAAATACGCCAGCTGTACCTGTGAGAGGAGTGAGGACTGTCTGTGTGCTGTGTTTTCCTCATATGTCCATGCCTGTATGATTAAAAATGTAACACTTGAAGGATGGAGAGAAAACGTGTGTG
Seq A exon
GTAAGAAGGCTAAAATCCAATATTTTGGTAGACTAATGGATGTGCATCAAAGATGATATAAATTTAGGATTTAACACATGCACACTAGGAACAATAGCTATAATGAAAATTACACAACACTAAGTTGACCTTAACTATTACAATATCAGCTCTGAGGAACCACTATCAGAACTTTTATTCCATACTCTCAGAAATAAAGGTACAAGAGCTGTTACTGGGGTGGTATCTTTTTAAAAGGGTTACATTTGTACTTAAAGAGTCCATATTGGTACCTCAACGGTATATATTAGTACCTAAAAATTCAAAAGGTAAATATTTGGGTAACACTTTACAATAAGGTTCATTAGTTAATGCATTTACTAACATGAACTAATCATGAACAACACATGTACAGCATTTATTAATCAAAATTGAACATTTACTAATGCATTATTAACTTCCAAGTCTTGCTTGTTAACATTAGTTAATGCACCATGAGTTAACATGAACTAACAACGAACAGCTGAATTTTCATTAACTAACGTTAACTAACATGAACAAATACAGTAGTATATATGTATTGTTCCTTGTTTGTTCATGTTAGTAAATGCATTAATTAACATTAACTAATAAACCTTATTGTAAAGTGTGACCAATATTTTTATTTTTTTATGTATCAAGATGTTACCCTAGAGGTATTGAAAAGCCATGAAAGGGCCTCTTTCGGTTCAAGTCTACATCCGAATTTTTAAAAAATGCTTCATGATGGGCGCGGATCTCTGCCAGCAGAGGGAGGAGTGGGCATGGCCGACAGAGGAGGGGAGCGAACAACCGTTGTCAGTTAGCTTACAAAATGAGGCACAAACCGTGAGACCCATGATTTTATAGTTCACAAAGTTAAAATGCAAAGAATTAAACAGTAATGTAATGCCCTGCTACATTTGTTATTCGTAAATTCATATACACATAACCACAATTTGTTTTATCATGATGAAGATAATCATGTAAACACTATAAATGAGGAGGACTTCTCTCCTCCTCAATCCACGGGTCTGACTGCAGACACAGTGGATAGCAGTGCAGCAGGTCTCTTTCCCTGTCTATTCCAACCATTAACTCTGCTGATAATTCAAAGAATTTTAAAAATAAACCCAAAACACAGCAGCACGGATATAGGTGATGTGTCAGAATGGTAACTAACTCAACTGATAACAGACAAAGTCCGCCGTTCTCCTACTCTCGTACAGCTCTCTTGACAAAAATGCTTGCTGCAAACCAACAGCTTTGCTGCATCGGGCCTGACAGCATCGTAGGGAAAAACATGCAACAAACCCTATGAATCATGGAAACAAACACATACGACCCTTCATAAACGGCTAAATACTGCTTGCCGTGTGCGGACGCGATCTCACCCAATCATTGGGTCTCAGCTTGGCAGGTGTGCCTTGCCTTCGGAAAGCACATGTTCTCATAAATAAGAAGCAGGGTCTTTTCATAGGATAAAAAACTCCGCTATGAATAATAATGAGAAACCGACGTGTCATCACTACACTAGCAGATTCGGGCTACGTCACTAATTTTAATCTCGCCCCAAAAATGATTTTAACTCAGAAGATGAAATTAGCTGGCAAAAGCTCTAAATTATCCAGTTTTACACACAATTAAAGCTGACAGGTGCTAACAATGTTTTAAATGATGCTCAACACACACAAATCTGTTTAAATCTCATAAAAAATACACAAGGGTTTCTTGAACCTTTAATATGCACTCTTTTGAAAAGGTACCACACCAGACAGTTCTTGTACTTTTATTTCTGTGAGTGCAACTGATGGAAAAAAACAGCCAGTTGTCTTAGCAGTAGCTTTAAGAAAATGTAGTTCAAATTAAAATGTACCAACTTGACTGACTTCATGGAGCAAACACAAAAACTTTCAACAACACAACAAGAATGAAATGTACCCCACACACCACCTAATGCCATGAACTCTTTTGCTACTAACTATACTGTAAGTGTCTGAAAATTCTCTGTCTTTGTATAGATGATCTGGGGTTGTCATCTGCAGAGTTTTGGCATTGTAGTATGCATTATGTGCAAAATTCACTTTAACACCACATTCCTTGAAACTGATCCCCACAG
Seq C2 exon
GCAAGTATATACAGAACTGCCCAGCACCACAGAGATACTTCTATTACCTGAAGAGCTGCCAGCCTACCTGTCTTTCTCTTTCCTCTGAGCACACAAGCTGCAAAGAAGACTTTGTCCCTGTTGATGGATGTGCGTGTCCAGATGGACTCTACAAGGATCAGGATGGACAGTGTGTACCAATTGAAAAATGTCCATGTTACGGCATGGGAAAGATAGCCCAACCTGGCACATCTATCGACATTAATGGTCAATACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078994:ENSDART00000154598:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=FE(56.0=100)
A:
NA
C2:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=67.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]