HsaINT0106809 @ hg19
Intron Retention
Gene
ENSG00000117983 | MUC5B
Description
mucin 5B, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:7516]
Coordinates
chr11:1253874-1254498:+
Coord C1 exon
chr11:1253874-1254000
Coord A exon
chr11:1254001-1254242
Coord C2 exon
chr11:1254243-1254498
Length
242 bp
Sequences
Splice sites
5' ss Seq
GCAGTGAGT
5' ss Score
7.39
3' ss Seq
CCTGGCCCCACCGACCACAGCCA
3' ss Score
4.39
Exon sequences
Seq C1 exon
AACTGCATGTTTGACACCTGCAACTGTGAGCGGAGCGAGGACTGCCTGTGCGCCGCGCTGTCCTCCTATGTGCACGCCTGTGCCGCCAAGGGCGTACAGCTCAGCGACTGGAGGGACGGCGTCTGCA
Seq A exon
GTGAGTGCCCACGCTGGGGGTGGGATGTGTCCACACCGCGTGGGGGTGCGGGGGACCCTGGCCGGCAGCAGCCGTCACTCACACGGTTCTCAGCCCAGAGCTTTGCACTTCCTCATCCCAGCCTCGCAAGAACCTCATGCCCTTGCGATCCCCACGTCACAGACGGGGATGCTGAGTTGAAGATGGGGGCTGGCCAGGCTGCTCGGCCGCTGACCTGTCCCCCCTGGCCCCACCGACCACAG
Seq C2 exon
CCAAGTACATGCAGAACTGCCCCAAGTCCCAGCGCTACGCCTACGTGGTGGATGCCTGCCAGCCCACTTGCCGCGGCCTGAGTGAGGCCGACGTCACCTGCAGCGTTTCCTTCGTGCCTGTGGACGGCTGCACCTGCCCCGCGGGCACCTTCCTCAATGACGCGGGCGCCTGTGTGCCCGCCCAGGAGTGCCCCTGCTACGCTCACGGCACCGTGCTGGCTCCTGGAGAGGTGGTGCACGACGAGGGCGCCGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000117983-MUC5B:NM_002458:17
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=FE(56.0=100)
A:
NA
C2:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=67.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTGCATGTTTGACACCTGC
R:
CCGCGTCATTGAGGAAGGTG
Band lengths:
292-534
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)