DreINT0099751 @ danRer10
Intron Retention
Gene
ENSDARG00000000103 | myh10
Description
myosin, heavy chain 10, non-muscle [Source:ZFIN;Acc:ZDB-GENE-030616-162]
Coordinates
chr6:7495134-7495586:+
Coord C1 exon
chr6:7495134-7495342
Coord A exon
chr6:7495343-7495477
Coord C2 exon
chr6:7495478-7495586
Length
135 bp
Sequences
Splice sites
5' ss Seq
AAAGTACGC
5' ss Score
6.02
3' ss Seq
GAATGCTTGTCTGATCACAGGGA
3' ss Score
4.62
Exon sequences
Seq C1 exon
GTGGACACCCTGAACACAGAGCTGGCAGGAGAGCGCAGCGCTGCACAGAAGAGTGAGAACGCACGTCAGCAGCTCGAGCGCCAGAACAAGGACTTAAAATCCAAGCTGCAGGAACTCGAGGGATCCGTCAAATCAAAGTTCAAGGCCTCTATCGCCGCCCTGGAGGCAAAGATCCTCCAGCTAGAGGAGCAGCTCGAACAGGAAGCAAA
Seq A exon
GTACGCAAACGTTTTCACAATCACTACTCAGAAATGAACCGATTGAGTTATTGTTTTCTCTAATACAACAGGTTACTTGAGTAAGGACATTTTTTATCAGTGTTTTGCTGAAGCTGAATGCTTGTCTGATCACAG
Seq C2 exon
GGAAAGAGCTGCAGCTAATAAGATTGTGCGTCGCACAGAGAAGAAGCTGAAGGAGGTGTTCATGCAGGTGGAGGACGAGCGGCGCCATGCAGACCAGTATAAAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000103:ENSDART00000151114:40
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.600 A=NA C2=0.757
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(8.0=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACAGAAGAGTGAGAACGCA
R:
GTCCTCCACCTGCATGAACAC
Band lengths:
243-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]