GgaINT0127269 @ galGal4
Intron Retention
Gene
ENSGALG00000001183 | MYH10
Description
myosin-10 [Source:RefSeq peptide;Acc:NP_990805]
Coordinates
chr18:1704113-1705588:-
Coord C1 exon
chr18:1705380-1705588
Coord A exon
chr18:1704222-1705379
Coord C2 exon
chr18:1704113-1704221
Length
1158 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGG
5' ss Score
6.6
3' ss Seq
TGGCTTCTGATTGTTTCCAGGGA
3' ss Score
8.37
Exon sequences
Seq C1 exon
GTTGACACGCTGAATTCTGAGCTGGCCGGGGAGCGGAGCGCTGCACAGAAGAGTGAAAATGCACGGCAGCAGCTGGAGAGGCAGAACAAAGAGCTGAAAGCCAAGCTGCAGGAGCTGGAGGGATCTGTGAAGTCAAAGTTCAAGGCAACAATTTCTACTCTAGAAGCCAAGATTGCTCAGCTAGAAGAACAGCTTGAGCAGGAAGCAAA
Seq A exon
GTAAGGAAAACTCTGTGTGCTCTGTCAGTAGAGTGTGTGAGACATCCATGCCTTAAGTTACTGTGGGGTTGAGGTGTGAGGTCACAGCTACAGCACAGCTGTTAGGTTTTATTATTTAGAAACCTGTTTGAGGGACTGACTTGAATCAGATGCACTGAGGTTGAAAGTTTCAGAGTGTGTTCCTTAACTGAAACTGCTGATTTACTTCTTGAAGTTTACAAGTGTTTGTGTTAACTGATAGTCCCAGAAACCACAGCTGCTTTAGCAGAAGTTTCTTAAGACAAAACATCTTGAGACACTGGTCTCTTTGGGTTAGGCTTTAAAGAGAAGGAGGGCCACAGGGATGCTGAAGGGCCTGGAGCTTCTCCCCTGTGAAGACGGGCTGAAAGCTGTGACTGCGGAGCCTGGAGGATACCATCTGTATATGCATATCCATCAGAGAGGTGCAGAGGATGGAGCCTGGTGCTTGTCAGTGCTGCTCAGGGACAGGACAGGAGGCAGTGGGCAGGAATTGGAATACAGGAGGCTCCACCTGAACATCAGGAAGCACTTTTTGACTGGGGGTTGACTGGCACAGGTTGTTGAGAGATTGTGGGGTCTCTTCCTCGGAGGCACTCAAAAGCTGTTGGGTGTGGAAAAGCAGCTCTGCATGGCCCTGTTGGAACAGATGGCCTCCAGGGGTCCCTCCTCACCACTTTGAAGTAAATCTTGTGCTCTGTAGAAGTCATCTTTCTCCAGAGAGTGCTTCTTTCCATCTCAGTCCTCCAACTTTTTTTTTCCCCTGCCTTGTCCTTGGAAGACTGAAAGTGGACTGTCTTATCACCACCTCCATTCCTGTTGGGCTTTTCGCTCTGGGGGAGGACCACGGCATTGCTTAGCAATAACCCTAACACTGCTTTCTTGAATCTCACTGTGTAGAAGCACATCCCTACTTTTAGCCTCCAAACAGTACTTGTGCTGCTCCAGTGCTCGTACTTCATGCTTCTAAAGCTGCATCCCAGCTGACCTCCAGCGTACTAAAACTCAAAACTGAAGTCAGTGCTGCTGGTGGTGGCAGGCATGGTAGGCTCAAGCCTCAGCTGCACGATGAGGCAGGAGCCCTTGTGAGAGAACACATGTGGTGCTCACAGCCTCTGTGTGGCTTCTGATTGTTTCCAG
Seq C2 exon
GGAAAGAGCAGCTGCAAACAAACTGGTGCGGCGCACAGAGAAGAAATTGAAAGAAGTCTTCATGCAGGTGGAGGACGAGCGCCGACACGCAGACCAATACAAGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001183:ENSGALT00000023397:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.561 A=NA C2=0.757
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(8.0=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGACACGCTGAATTCTGAGC
R:
CTGCTCCTTGTATTGGTCTGCG
Band lengths:
318-1476
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]