DreINT0100270 @ danRer10
Intron Retention
Gene
ENSDARG00000017004 | myo10
Description
myosin X [Source:ZFIN;Acc:ZDB-GENE-070912-277]
Coordinates
chr2:42779402-42780708:-
Coord C1 exon
chr2:42780594-42780708
Coord A exon
chr2:42779509-42780593
Coord C2 exon
chr2:42779402-42779508
Length
1085 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGC
5' ss Score
7.31
3' ss Seq
GTTGTCTTTTCATTTTGCAGGTG
3' ss Score
11.77
Exon sequences
Seq C1 exon
GTACTATGTGTTGATGAGGGCTTTGGCTTTGTCAGAGGACCTTAAGGGGCGGAGTCTCTTGCTGCTGCAGCTCTATGACAACAGCGGTGCTGAATGGCAGCTGGGAAAAAACAAA
Seq A exon
GTAAGCAACAATCACGCTCTTTAGATCTTCACTGTAAAACTTTTTTACAACACAATTTAATCAGCTGTTCGCTATTTTTTTCTTCTTCTAATTATTATGCATGAAGTTGTATTGGATTAAGACTAAAGAACTAAACTGAACTCTGAAAACTGGACTGACACATTTTCAGTTTACTAGAACTTCTATGTTAAGCTGCTTTGACACAATCTACAATGTAAAAGCGCTATAGAAACAAAGATTAATTGAATTGAATAAGGAACAATGAATCCAGACCGCAATTATAGATTTTTTGTAGTTTTTTTATATACATATATCTTTGTTTTTTTTAAACATAATTTTACAGTAATTTAAATTATTGATCTTGCATTTTCGCTGATGTTGCACATAATCTATTATGATTACATAAAATGTACATTTTTTAACACACATTATGTGTTTTTAATATTGCTTGTTTATGTATTAGTGAAGTGTTCAGTTTTTCCACTTTCAAAGTTCACCATGGTAATAGCAAACGCAACATGACACAGCGCAACTGACTCTTAAAGGGAATGGGAGATGTGACTGATTGTTTTAATGCACGTTATGCTCAAAACACACCCATAACTCATTAAGAGAATAAACACAGCTCTGTTAGACCACTGCCAGGGCGCAGAGCACATTTTTTCTGTCCTTAAAATAGCAAAAGTGGATTCGGACACACCCTAATGCTTTTGCACCATGCGCTTTAGACCCTGCGCTTAGATCATTAAAATAGAGCCCACTGTGTAAGTTTTATTTGCTCGCGCACTCATGATTGAGTATTATGAATTATGAGTACAACATCTTTTGATAACACAATTTTCATGGAAATTCAACAGACATCAATAAGTTTAACACTTAAGTACATAAAAAATGCTTTTGTAATTTTTTTCTTAGTAATATTTTTAAGTAATGCTGTAAATGGAGGCTTTTACTACAGTAATATTCATAAGGACCTTAACTCCAGTCCCTGATTTGTGTACTTCGCCACCAGTTTTTTTATATACTTCTAGAACAGTAATCAGGCTTGAATGATGGGCTGCATTTGTTGTCTTTTCATTTTGCAG
Seq C2 exon
GTGTTTATGAGAGAGAGTTTGGAGCTGCGGTTAGAAAAACAAAGAGAAACAGAAGTTCTCAAAGCAGCATCAATTATCCAAGCTCATATACTGGGCTACAGAGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017004:ENSDART00000140159:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.7=100)
A:
NA
C2:
PF0006316=Myosin_head=PD(0.5=8.3),PF0061222=IQ=PU(76.2=44.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGTTGATGAGGGCTTTGGC
R:
GCTCTGTAGCCCAGTATATGAGC
Band lengths:
214-1299
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]