MmuINT0103873 @ mm10
Intron Retention
Gene
ENSMUSG00000022272 | Myo10
Description
myosin X [Source:MGI Symbol;Acc:MGI:107716]
Coordinates
chr15:25776318-25778187:+
Coord C1 exon
chr15:25776318-25776432
Coord A exon
chr15:25776433-25778080
Coord C2 exon
chr15:25778081-25778187
Length
1648 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAG
5' ss Score
8.04
3' ss Seq
CTTGTCCCCCTTGTGGACAGGTC
3' ss Score
8.82
Exon sequences
Seq C1 exon
GTATAAAGTGCTGATGAGGAACTTGGCCCTGCCTGACGACATCCGAGGGAAGTGCACTGTGCTCCTGCAGGTCTATGACGCTTCTAACAGCGAGTGGCAGCTGGGGAAGACCAAG
Seq A exon
GTACAGTGGCAGGAACCACCGCCACCATGCCTGCTCAGGGTGCTGCTGATACCCAAGGCTGTACCGTTCCCAAATGCGGCTAAGTGGTGGTTGTTAACATCCTAATGGTTCCTGTGGGAGAGAGAGGGAGAGAGGGAGAGAGGGAGAGAGAGAGAGAGAGGGAGAGGGAGAGAGGGAGAGAGGGAGAGGGAGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGCAGGCAATCAAGAGTGCTAGCTGAATCAGCCCCTCATGTTGTGGATCTACAAGCAACCCCCAACACCTCAGGAGTGAAACTCCAAAGCCTACCCATTCTCCTTTGGCTTCTGTGTCGTCCCCCCCCAACCCCCCACCCCCCCCCCCCGCCGCCGCCACAGCAGCTATTGTGTGAGAGACCAGCAGACAGCCTGAAACCCTATGGGTTGCCAAAACCTCAGCCAAGAACTATAAGACCCACGTCTGGCTGTGCTGCTGCAGCAGGCCCCTAACCCCTTACTCCAGGTGAGACTAGGTAGAGTGCTTTGACTGAGAGAGTCCTCACATCTGCATCTGTGCAGAACTGAAGGATGCTAACGCCACGTCCTGCTGTCAGATGCAGCTAAGTTGGCCAGCATGAGATCAAGGAGACCATTGACCAGAATAAGCCTGGAAGAACTTGTACTTTACTCAGTCCTGAACCTGGTATATTTGTAACCACTGAACCAGTGAGCTTCTTTTCCACCTTCGAACTTGATTATTAGAATGTGTGTGTGTGTGTGTGTGTGTGGTGCGTGAATTGAACTCAGAACTTCATACATACCATATGCTAAGCACTCACTCTTACCACTAAATTACACCCTCAGATTCCATAATTTTTTTCTCCTCATTTTTAAAAAAGTTTAATTTTGTTTTTAACTATGTGTCTGTGTATGGGTGTGTGCACATGAGTTCAGGTGGCTGGGGAGGTGAGAAGAGTAGTGGGACCCCTGGGAACTGGGAGGTATGGGTAATCATGATTCACTTGGTGTGGGTGCTAGGAGTCAAATTCGGGTCCCCTGGAAGAACAGCAAGTGTTCCTAACCACTGAGCTGTTTCTCTGGGGCCCGGAGCCGCCTTCTTGGTGTCAGTACGTTTTTGTGTAAACCTTTGAAGCCGACATAGCCTGATGGTAGTTGCTTAGCAGGCATGGAGAGAAGGTAGGTTCCCACGAGATATCAAAATTATGATACCTTCGGATTTTCTTGGATTCATTCCTTCGCCTCTCTTCTTCCTATGCCAGTCTCTGTGTCTCTTTTCATTAAGACTCTTGTCTAAGACTGCTGCTGGTGTGTGACCTTGTGTGCCCTGGCCACAATGGCAGGAGACACTAGGAACCTTAATGGCGATCTGACAGTCACCTGTTGAATGTAGCCATAACAAAGGAGGATGAGGCTTGACTCTGTGCTTTTGTGGTTTTCTAGTCAGATATCCTGATTGGATTTTAGAATGTCTATGGCAGTTGGACCATGTAAAATGCCCTGGACTGAAAAGCCTTATTGTGGGAGTTTGTAACAGACTGCCAGTAGAAAGGAAACAGATGTTGCCCCAAAAGGCAGGCCCTGACCTTTTTTTCCTATTCTTTTCCTCTGACACTTGTCCCCCTTGTGGACAG
Seq C2 exon
GTCTTCCTTCGAGAATCCTTGGAGCAGAAACTGGAAAAGAGGCGGGAAGAGGAGATTGACCGTGCGGCCATGGTGATCCGAGCTCACATCTTAGGCTACTTGGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022272:ENSMUST00000110457:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(44.7=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(43.4=100),PF0061222=IQ=PU(76.2=43.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATAAAGTGCTGATGAGGAACTTGG
R:
CGTGCCAAGTAGCCTAAGATGT
Band lengths:
222-1870
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types