DreINT0101054 @ danRer10
Intron Retention
Gene
ENSDARG00000099871 | myo7aa
Description
myosin VIIAa [Source:ZFIN;Acc:ZDB-GENE-020709-1]
Coordinates
chr18:3178121-3178508:+
Coord C1 exon
chr18:3178121-3178227
Coord A exon
chr18:3178228-3178322
Coord C2 exon
chr18:3178323-3178508
Length
95 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
3' ss Seq
TAATGCCTGCTGTGTGTTAGGAG
3' ss Score
4.39
Exon sequences
Seq C1 exon
GTATAGTGCCTTCACTGACCTACCAGGTGTTCTTCATGAAGAAGCTATGGACAACCACCGTTCCAGGCAAAGACTCCTTTGCAGACTCCATCTTCCACTATTATCAG
Seq A exon
GTCAGAAACACTGATGAACCCCATCAAGACAGCACAAACACTGGGCTGAGTATAATGCAGCATATAAACTCATTATAATGCCTGCTGTGTGTTAG
Seq C2 exon
GAGCTTCCTAAATATCTGCGAGGATATCACAAGTGTTCCAGGGAGGAGGTTTTCCAGCTCGGCGCTCTGATCTATCGAGTTAAATTTGAGGACGACAAATCCCACTTTCCCAGCATTCCCAAAATGCTGAAGGAGATGATTCCTCAAGACCTGATTCGCCAGCTCTCACCCGACGACTGGAAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099871:ENSDART00000166980:42
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF093795=FERM_N=PD(17.2=44.4),PF0037313=FERM_M=PU(10.8=33.3)
A:
NA
C2:
PF0037313=FERM_M=FE(55.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTTCCAGGCAAAGACTCCTT
R:
TTGGGAATGCTGGGAAAGTGG
Band lengths:
171-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]