DreINT0101099 @ danRer10
Intron Retention
Gene
ENSDARG00000044632 | myo7ab
Description
myosin VIIAb [Source:ZFIN;Acc:ZDB-GENE-091110-4]
Coordinates
chr21:22267891-22269962:+
Coord C1 exon
chr21:22267891-22267997
Coord A exon
chr21:22267998-22269776
Coord C2 exon
chr21:22269777-22269962
Length
1779 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGAA
5' ss Score
6.68
3' ss Seq
TTTTCAAAACTCTCCTTCAGGAG
3' ss Score
7.85
Exon sequences
Seq C1 exon
GCACAGTTCCTTCATTGACCTACCAAGTGTTTTTCATGAAGAAACTGTGGACTAACACTTTCCCAGGCAAAGATCCCATGGCCGACTCCATTTTCCATTACTTCCAG
Seq A exon
GTAGAAAACACATTTTGTAGCCTTTTTCAGACATGCAGTCTTTCTGGTGAATTACTAGTTCATTACTGTATATGTGAATTTTCAGGAATGGGTTTTTTAAGTTTTCCTCCTTGAGTTGTGACAGTTTTGGATTTTTGTTTTTGTTTTGGTGAGGGTGGGATTTTTCTTTATTACCAATACTGCAGCCAATAAACAGGGGGTGATCAAATCGTCTTGTCTTCATTTTTCAGGATGTGTCCTGCACGCCAGAAATATTTCTGAAAATGCTGTTATATAGTTACTAAATAATCGGGTGTCTGCAATTAAGAAGTGGTGTTTCATTCCCTTCATTTGTTCACTACTTTTTATTTACAGTTCCAGAGAAACCAAAAATTTGTGTGGTCCACTCTCCACTCTGATTTTGAGTGTACAAAGGCGGAAAAAAGAACATGATTATAATGAATATATTATTAATATATAATATTATTAATATATAATATAACTAATATTTAATACCATGTTTCTATATTTCCATACAAATAATTTTTACATTTTTAAAATCTTTCTTTTTAAATGTCATTAAAAAGCAAATCCCTTAATGTGTGCTTAGTTAGATTTTTTCACCATGTATTGCACTTGAGATAAAAACAATCTATAGGATTTACACTGATAAATTTAAATACAATGATAAATTTACCCAGCCTCAAGTGGTTCCAAACTATTATAATTTTGTTGTTGATGTTGTTGTTGTTGTTCTTGTTGTTGTTCTTGTCATTGTTAAACACAAAGATATACTGAAGAATGTTGGAAACCTGCAACCATCAACATTCGTAATAGCAAAAAAATACAGTGAAAGTCAGCTACTATTCTTTAACATTTTTCAAAATAACTTCTTTTGTGTATAATGAGCAAGAATATTCGCTTTTGCATGAGATGTCCCTTTTAAAATCCAATTGTCTGAAGACTCATGACTGATTATAAGAGAAACAGACTCAATTTTGTCAGTGATCTGACCTTTAAAAGGATGTTTTTAATGACATCTCCATTTGCCAATTCAGTATTTCACTGGTAAAGAGATTACATTTCAGGATGTTTTTCCCCCAAAACATTTCTAGCAAATATATGTAAATCAAGTCTATCTGGATTACAATGTGAAATCTGTTTGTTTAATTCACAATAAGGGAAAGTATACATTAATCAACGTTCCGCAAAAACTTAATGATTTATTTTGATGGTCCCTATTGCACTTAGTCTTTTTGCTGACTAAAAGTTGCATTGCAACTACATACCAGTTACTTCTCATTTGTGTATTAGTGGACTTTTTGCCTAATATCTGTTGATACTGCTCCTTCAAAGACATTTAACGGACTATAAGAAACTTTGCAAGTGCATGTCATCTTACAGCAACCCTAAACCCAACATAACAGTTTAATTATAATCTATTGAGAACTAGTTGGCATGTAAAAAGGCACGTTAAAGGCACCATCAAAATAAAGTGATACCCTTAAATGTAACCAATTTAGCCCAAAGTTTTCACTGGTGGTCCCTTCACCAGATGTTAAAGCCATACCAATAAAAAAAAAAAAAAAAACTTAAAACAATACTCAAGTTAACAACAAAAAACAACTACAATATCAAAAAGTCAAGAGTTCACAATGTTGAAAATAAGCAGCTTTAAAAATATACTTCAATGACCCAAAAGATAGACATTCTCTAACAGATTGTGGTATCAAATTCCACTGATGCTTCTCTTAACTTACATCTTAATCTCATAACTCAATTTTCAAAACTCTCCTTCAG
Seq C2 exon
GAGCTTCCAAAGTATTTGCGGGGCTATCACAAGTGCTCTGTTGAGGAGGCCTTTCAGCTTGCTGCGCTCATATACAGAGTCCGGTTCGAGGAGGACAAATCCCACTTCGTGCACTTCAGCAAGATGCAGAAAGAGCTGCTTCCTCAAGACCTCATTCATCAACTCTCACCCGACGACTGGAAACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044632:ENSDART00000148019:41
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF093795=FERM_N=PD(18.1=47.2),PF0037313=FERM_M=PU(10.0=30.6)
A:
NA
C2:
PF0037313=FERM_M=FE(55.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACAGTTCCTTCATTGACCT
R:
CAGTCGTCGGGTGAGAGTTGA
Band lengths:
286-2065
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]