DreINT0103030 @ danRer10
Intron Retention
Gene
ENSDARG00000007429 | ndor1
Description
NADPH dependent diflavin oxidoreductase 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1555]
Coordinates
chr5:31896134-31896832:+
Coord C1 exon
chr5:31896134-31896280
Coord A exon
chr5:31896281-31896713
Coord C2 exon
chr5:31896714-31896832
Length
433 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
AATGTTGTGGTGTGTTTCAGCTA
3' ss Score
8.76
Exon sequences
Seq C1 exon
GAGATGTTTACGTACCACTGTGGGTGAAGAAAGGCAGTTTAAAATTCCCACAGGACCCAGAAAGCCCTGTGATCATGGTGGGACCAGGAACTGGAGTGGCTCCCTTCAGATCTGCCATACAGGAGAGGGTTGCTCAGGGGAAGATGG
Seq A exon
GTGAGTGAGTGATTTAAGGAATTGATATTTTAGTCATAATTTCTGATGCATCTTCCCTTAAAATAAGGGGATAGTTCACCTCAAAACATTTTTTGTGAGTACATTTACTTACACTAATGCTTCCAACCCTTTATGAGTTTCTTTGTTGCACACTAAAGATGATAACAATACATTTGGAAACCACTAGCCATTGACTTCCAAGGCTGCCCTTTTCTTCAAAATAAACATTTGTGTGTTCAACAGGAGGAGGAAACTCAAACAGGTTTGCAACAAGTAAACTTTGACAGACTGTTCACTTTCAGGTGAACTATCCTGTTAATACAGTACATATTTAATGGCATAGAGGTATTTGATAAGTAGAGACTGAACGTAGTGCTGAGTCTCAGAGCGCCTTTATATCCTACATTCTAACCAATGTTGTGGTGTGTTTCAG
Seq C2 exon
CTAATGTGCTATTCTTTGGCTGTCGATCTGAATCTAAAGACTTCTACTGTGGATCAGAATGGCAGGAGAAGGTGCAGGCGGGACAAATGATACTCGTCACAGCCTTTTCCAGAGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007429:ENSDART00000033545:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0017516=NAD_binding_1=PU(22.4=48.0)
A:
NA
C2:
PF0017516=NAD_binding_1=FE(36.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGATGTTTACGTACCACTGTGGG
R:
TCTCTGGAAAAGGCTGTGACG
Band lengths:
262-695
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]