HsaINT0111728 @ hg19
Intron Retention
Gene
ENSG00000188566 | NDOR1
Description
NADPH dependent diflavin oxidoreductase 1 [Source:HGNC Symbol;Acc:29838]
Coordinates
chr9:140110111-140110469:+
Coord C1 exon
chr9:140110111-140110257
Coord A exon
chr9:140110258-140110350
Coord C2 exon
chr9:140110351-140110469
Length
93 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
AGCACCCTGTATTTCCCTAGGAA
3' ss Score
8.57
Exon sequences
Seq C1 exon
GACCTGTCCGGGTGCCCCTCTGGGTGCGGCCTGGGAGTCTGGCCTTCCCAGAGACACCAGACACACCTGTGATCATGGTGGGGCCTGGCACTGGGGTAGCCCCCTTCCGAGCAGCCATCCAGGAGCGTGTGGCCCAGGGCCAGACTG
Seq A exon
GTGAGCACCCAGGGTCTCCGGGCAGGGTTGTTGCCAGGGCTCCCCAGCTGAACCTCAAGGACCTGTGGCCAAGAGCACCCTGTATTTCCCTAG
Seq C2 exon
GAAACTTCTTGTTTTTTGGCTGCCGCTGGCGGGACCAAGACTTCTACTGGGAGGCTGAGTGGCAGGAGCTGGAGAAGCGGGACTGTCTGACCCTCATCCCTGCCTTCTCCCGGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188566-NDOR1:NM_014434:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.005 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0017516=NAD_binding_1=PU(22.4=48.0)
A:
NA
C2:
PF0017516=NAD_binding_1=FE(36.4=100),PF054027=PqqD=PU(14.0=30.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCCCAGAGACACCAGACA
R:
CCACTCAGCCTCCCAGTAGAA
Band lengths:
167-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)