GgaINT0126437 @ galGal3
Intron Retention
Gene
ENSGALG00000008920 | NDOR1
Description
NA
Coordinates
chr17:1352330-1353161:+
Coord C1 exon
chr17:1352330-1352476
Coord A exon
chr17:1352477-1353042
Coord C2 exon
chr17:1353043-1353161
Length
566 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
TTCTGATCTGCTCTCTGCAGGGA
3' ss Score
9.08
Exon sequences
Seq C1 exon
GTGATGTCCGGGTACCTCTTTGGGTGAAGAAAGGAGGAATGAAGTTCCCAGCTAACCCCGACACTCCTGTGATCATGATTGGCCCTGGCACAGGGGTGGCACCTTTCCGAGCAGCTATACAGGAGCGAGTGGCACAAGGGCAGAAAG
Seq A exon
GTGAGGGGTGGGCATGGGCTGCCCCTTGCTGCTGGCAAGTTTATGTTCAGCATATAGGAATGAGGAAATGGGTGCTCCTGTGGGTTTGGACAGGCTCGAGCTTTACTGTAGTTGGAAACAAGCTGGGCTCTGAGGGAGGTCAGCACCAGAGAGAGCCTGATGTGTGCCGGCTATGTGGTTATTCACAGGCTGGGTTGCCAGGCTGCTTATTGGGGCAGGGCAGGGCTCTGAAATGCCTCTTTCTTGGTTCCCTGCAAGTGGAGTTGGGTTGCTGAGATTGTCTGCTGCTGCACAAGCAGTTTTCCCTCTGCCCTTGTCCCATTGTCATTGTCCTGGCCCACTTGTGCATCTCTGCAGAAGGCTGCTGATAGGCTCGTGGAGGGGAGCTGGGAGCCCTGCAGGGGCTCACCCTGCCCTACTTGCCCACCACGCCCCACATTTCCAGCCTCTGGTTGTCACAGGTCATGTGCATTCACACTCACACAGTGCTTGAGTTGCATGGGTACTGATGGCCTCACAGGGCATTTGGTCCGCCCAACACAGCCCTTCTGATCTGCTCTCTGCAG
Seq C2 exon
GGAACTGCTTGTTCTTTGGCTGCCGCCAGAAATCCAAGGACTTCTACTGCCAAGCAGAGTGGGAAGAGCTGGTGACAAAGGGCTTCCTGATGCTTTTCACGGCCTTCTCCAGGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008920:ENSGALT00000014501:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0017516=NAD_binding_1=PU(22.4=48.0)
A:
NA
C2:
PF0017516=NAD_binding_1=FE(36.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTACCTCTTTGGGTGAAGAAAGG
R:
CTGGTCCCTGGAGAAGGCC
Band lengths:
256-822
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]