DreINT0105518 @ danRer10

Intron Retention

Gene

ENSDARG00000052139 | notch3

Description

notch 3 [Source:ZFIN;Acc:ZDB-GENE-000329-5]

Coordinates

chr3:53279646-53280391:-

Coord C1 exon

chr3:53280279-53280391

Coord A exon

chr3:53280176-53280278

Coord C2 exon

chr3:53279646-53280175

Length

103 bp

Sequences

Splice sites

5' ss Seq

CTTGTGAGT

5' ss Score

7.15

3' ss Seq

CATTATCGTCTCTTTTTTAGGGG

3' ss Score

10.06

Exon sequences

Seq C1 exon

GACGAGGGTGTCAAAGTAGATTCAGCGTGTGCGAGTCTCAGCCCTGTAAAAATGGAGGAGTATGTTCCTTGTCTGGCAGCTCCCCACCAGGATACTCTTGCACTTGTCAGCTT

Seq A exon

GTGAGTATCCTGGCTTGAAATGAGATCATTTAACACTATGTTACTACCACTTTCCTCTAGACTTCAAAAGCAGTAACTTAAATCATTATCGTCTCTTTTTTAG

Seq C2 exon

GGGTACGCAGGTTCTAACTGTGAGAGGAGCATGAACTGCAAAGAGCTGCCTTGCTACAATGGAGGCAGTTGCACTCTCACCACACGAGGGGCACGTTGTACTTGCATTCAGGGCTTTGGTGGGCCATTGTGTCAGCACCGCAGCAATGACGGCTGCTCCTCCAAGCCATGCCACAATGGAGGCTTATGTACAGAGGAAACCAGCTATCCATTTTTTCACTGCCAGTGCACCAATGGCTGGAAAGGCAAACGATGTGAACAGAAAACTGGGTCATCGGCTCCACTTCCTTCTCCTTGCCCTATTGCTGACTGCTTCAGCAAGGCCAATGACGGTGTGTGTGACAAAGAATGCAACTCCTTAGACTGCCGCTGGGACGGAGGTGACTGTTCTCTTGCTGTAAACCCCTGGGCACGCTGTGCAGACCCTCGATGCTGGCGGCTCTTCAATAACAGCCAATGTGACGAGTTTTGCAATAACGCAGAGTGCCTGTTCGATAATTTCGACTGCATAAACAAAGAGAAAGTCTGCAA

VastDB Features

Vast-tools module Information

Secondary ID

ENSDARG00000052139:ENSDART00000073930:23

Average complexity

IR

Mappability confidence:

NA

Protein Impact

ORF disruption upon sequence inclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=NA C2=0.000

Domain overlap (PFAM):

C1:

PF0000822=EGF=PD(6.1=5.3),PF0000822=EGF=PU(79.4=71.1)

A:

NA

C2:

PF0000822=EGF=PD(14.7=2.8),PF0000822=EGF=WD(100=17.5),PF0000822=EGF=WD(100=18.6),PF0006612=Notch=WD(100=20.3),PF0006612=Notch=WD(100=20.9),PF0006612=Notch=PU(15.0=3.4)

Main Inclusion Isoform:

NA

Main Skipping Isoform:

ENSDARP00000068420