DreINT0108798 @ danRer10
Intron Retention
Gene
ENSDARG00000033251 | osbpl3a
Description
oxysterol binding protein-like 3a [Source:ZFIN;Acc:ZDB-GENE-040912-77]
Coordinates
chr19:20429689-20434468:+
Coord C1 exon
chr19:20429689-20429839
Coord A exon
chr19:20429840-20434382
Coord C2 exon
chr19:20434383-20434468
Length
4543 bp
Sequences
Splice sites
5' ss Seq
CTGGTTAGT
5' ss Score
6.32
3' ss Seq
ATTTTCTTTTTTTCTGCTAGTTC
3' ss Score
9.19
Exon sequences
Seq C1 exon
AATCCTGATGCTCCATCTTCTCGTCTACATGTGTCCCATCCTAACTTGGTATATTCAGAACCCGTTTCACCAGACTCATGCCTGGAGAGTCCAGACTCACCCACGGAAGCCTCTCGAATGCAGGAGGAGTTCTGTCGGCTTGCTGGCACTG
Seq A exon
GTTAGTTTGAATAGTCACGTTTGCACCATGTCAGAAATTATTATATTATATTAATAAATCTCCCCTGGTCCTTGATTTTGATTTGATTTAAAGCTGATTTGAACAAACTTTCACCTGTGACCTCAATGAATCAGTATTGCTGCTCTAGAGTGGACAGTCTAAAAAAATAAATTTCAGACGCCAGATATATTTTTTTTACATTTTCTTTTAACAAGTTCATGTCAGGACACTATGTGCAGTTTATTTATAAACTTATTTCTAGAGGATTACGTGCTTATGATTGACCACGGCTGGTCCAACACTAGCCAACAAATGAATTATTAATCGGATGAATCTTAAAACATTATAAATAAATAGAGTTTCGTACTTCAGTTATCTTCGTCTTGAAGAATCCCTCTTCCACCCCTACTACTCCTTTTTCCTAGATAGGGTGGTACAGCAGCTCAGTGGTTAGCACTATTGCCTCAAAGCAAGAATGTCACCAGTTAAACTCTTTAATAGGCCAGTCAACGTTTCTGTGGGGAGTTTACATGTTCTCCCCGTGCTCGCGTGGGTTTTCCCAGGGTTCCCCGGTTTCGTCCCACAGTCCAAAGACATGCAACATAAGTTCATTGACTAAACCAAATTGGCACAATAGATGAGCTCTTAGTCAAGATCCCATCTATGCCTTTCAGTCAGCAGTCTATCTCTTCATAGTCATGCTTATCTGTCATAAGCCATAACTAAACCAGGGGATTTCTCGAGACATACCTGAGCTCAAACTCCTCTCTTACCCTTCACATGAGAGGGAGCCCCTAGCTTGAGGATCTTCTTAGCTCAGGGCTCTCTCCTGGGACAGCATGGCAAACACGCTGTATTATTTATTATTAGCTAACGCCTGTTTCACACCGCAAGCGTCAGCGGCGCGTGAGCAGAGCGTGAGCAGCGCGTGTGTTTTCGGCGTCCATGTTAACAGATTAGAGCTTTCATACCGCGCGCAGCAGCAGCGCGTCAGTGCGAGGCGTGAGCGTCGCCGAAGCAGCAGTGCAGCGATAGTTTCGGCGCTGGGTCTATTTTTGATGCGCTGCTCACGCTCAATTAAAGTGACAGTGCATTGATAATGACCAAAATCATTAAATGACAGTAAAAAGTAGCAATTTTACCCAATAAATGCGTTAATAATGTCAAATGGTTTATATATAGTCATTCAAATGAACTTAAAACGATTAAAAACGGCAACAAACATTTATTTAGGCCCAAACTACAAAACCAAATGTAAAACAATTTTACTATCAGTTTTGCTTAAGTTGCACACTAGTGTTGTAGGAGAGGGTAAATGGAATATTTACGGGATTTGTAGTCCATTGCGAAGTGTATTGTGGGTAGTGTAGTTCGACACGCATGCTGGATGATGTGAGCTCGCTGTGTTCTGTGCAGCTGAGCAGAGCAAGAAAGTTTTAATCGGCTTTGTTTTTTGTTCACTCGAGTTATTCCTACCGGGAGCTGTTTGCACTGTGAATCTCACAACACGAAAATAAGTAAAAGAATGGCATGCATTGGTTACTTTTGTCCGTCTCATCATCTGCACGAGCATGAATTAACGAGCTGTTATTCTGCCGCTGGACATCACTGAAGCGGATAAATTAACACTAGTTTGATCATGTATAAATATCATTATAACTACATTGTATAAATATGATTATAACTAGGTCTACAGCAACCTGATAATCAAAAAACAAATGACATGATATCACAGGCGATTGTCTTCTGACTGTAGACAGTAGACACCTCTCATATAAGTTAGCTTGAGAAGCATACAGTACTATTTGATCTATAAAATTTGTAAAATAAACATTTGCAGGTTAATGAAACAGCATATGAGGGGCCTTGGTGCAGATGAAAAGTTTAAAAAGTGTATTTGTATATAGAGGGGTAACTAGATAGAATAGACAGAGATAGGTTGATCTCAGCAGCAGCTGCCGAAGAGCTGCGCGCTGCAGACGCAGCTGGTGTGAAAGGCAAACGCCTGCGTGCTGCTACTGCTCGACAAACGCGCTGCTCACGCTCTGCTCACACGCCGCTGACGCTTGCGGTGTGAAACAGGCGTAAGTGTGAACTTTTGAAAGTTTATTGATGTAAATGAGGATAGCGGTTACATAAACTGTGACAATATACTCAATCCTTTATACTGGAGATCATGGTTATGGGTGGACCATTAAAGTATTCATAGTTGTGTAAATTTTGTCAAGCTTACAGTTTTCTGAATTATTTTTGGTTTCAAGTTATCTCAAACCATTGAGATTAATTTGTTTTAATGCTTTTCCACTATCGGTTTAAACGGTTCCATTCTGTGCTGATCTGGTCCAGTCAGCACGAAAATGGTTTCTGTTTCTACAGTGGTACTGATAACAGGGCTCTTTGGAATGCAATACAAATGCGTCAGTCGATGCCTTGGTAATGCAAGTTAATGAGATTTTTTTTCTGATATTTTTATTGATAAATAATAAAAATAAATAAATGTATAACACACTTTCACTTCCACCGATCACACAGAATGGGCTTTATGCGTTGAGAGTAGAGGTGTGAACCTATACTGGTCTCACAGTTCGGTTCGGTTACGATTATCATGCCATCAATTCGGTTCAATTTGATGTCTCGGTCGGTGCATCACGGAGCATTGACGATGCTTTCCATACACAGTGTTATATTTTGGGGGGGAGGCTAAAACATGCTGTCTGTATAAACACAGACACACAGCACCACACTGTCTCTCATTCAAACTCAAACGCAAACATAGACAGCACCAAACAAACAAACAAACAAACACGCACACAAACACACACTTAAGCCCTCGCAATATGCGTTTAGCCGGGAGAGCACGGCCTTTGCACTCCGCGCGAGCTCTCCCGGCTAAATGCATATTGCGAGGGCTTAAAGGGAGCAGAGGTCGTAATGTTGAGCGAAAAAAAAGAAAAGAAAAAAGACAGCTGTGAAACATAACCAGCTTTGTCTTTTTGTAGGAAACACACTTTAGATCTTTTTAGGGTAAGAGGTTTTTGAGTTATTGCCGCTATAACTGAATGTGTCAGGAATATCGAAAACAAAACCAACTTAACCACGCTCATTTCTGGCGCCCCCCTGGATGTACAGCGCCCTTGGCATTTTCCTTCTCTGCCTATGCCACGGACCGGCCCTGAGTTGGCTCCTGAGTGTTGTAAATACCGGCGTTCACCTCCCTTGCGACAGAGCACATAGGAGATAGATGACGTCAGTACATAATAACCGGTTATGATTATTACTGAACCGATATCAAATTATCCGCGTCTGCATCGCGGTGAACCGAATAAACAATTAATTTTGGCACCCCTAGATGAGAGACATCTTTTTTGAAAGGTTTACTAATGGCCTCAATCTTTTCTGCGTGCTGTTTATGCACCCTACGTGCCCTGCGTTTTAACCGCCTGGTGTACTTTGCGTTTTTGCCCTTGTGCACCGTGCGCTCTCAGTTCAGAAAAAAAAAGTCAACTCTTAGCATAACAACATGGTACGTCAGTCGCGTCTGTTTCATTCTCTAATCAAATGAAAGCAGAGGCGTGGTTTCCGTTGAAGTGCCTGCAGTGTTTATGTTATCTAGACAACAACAGAAACTTTTGAAGACGGAGGAGAGACTTGTGGTTGCTGTTTTGGGTTATCTTAGAGCTGTATGACTTCACAAATCATGAATACCACAAAATTAATAATTATTAAAATTATATTATATCAACAGCAACACTTAAACAATACCCAGGTGATTCAGTCATTGCCTAGCGACATACTGTAAAAAATGTACCCCGCTCCTTTTTTTCTTGTAAACTAAAAAAGGCAGTGCGATGCGCCTCACATTTTTGGAACACAAAAGCACCTTCAATGTGATCAGCTATGGAGAAACTAGCAGGCAACACAGTGGTGACGTCAGACACACTTTACAAGTCCAGCACTGTTGTCAAATGGTGCCTAGAACCATTTGTGCCGAGAATAGTTTGTAATTATCCCGTGCCATTCCAGGCTTACATGGAAATGCAACTGGAACCATTCTTGATATAGAACAGTTCGACACTATAGTGAAAAATCTGCTAATGTACAGGTAGTTCACTAAAACTGTTGTGACTGCATGGAATGGTTAAGAAAAGAGAACTGTTCAGTCCATTAGCAGTAAAGCCGTTGTTGCTTGGCAGAAGAATAACATTTTTATTCATATCAATGCATTTGATTTGCTTTGCTTTATTGTGTGAAACTATGTACAGTATATTGAATGACCATTTTATAAAAGCAACAAGGATCCCAAAATTGACAGTATAATTAATTTATTATAGCTTAAGGGGCTTAGGCAATCTTGTCTGTTATAAATCCACTGTAATTAAAGTTAGTTTTAAAAATATTTTAATGTTCAATATTAAGTTTTGCTTTTGTTTAAAGTTTGTACTGATAATCATAAAATATTACTTGTATTGTTATCAGCTACTGACAGTTTTATATGATAAAAATCATATAATTGAATTATACGAATTTTCTTTTTTTCTGCTAG
Seq C2 exon
TTCATTCCACTCTTCGGTCAGCGTACTCTTTACTTTGCTCCGAGAGAGACAGAGTCAAGAACACACTGGATTTTATCAGTGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000033251:ENSDART00000142841:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.745 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]