DreINT0110592 @ danRer10
Intron Retention
Gene
ENSDARG00000103379 | pax6a
Description
paired box 6a [Source:ZFIN;Acc:ZDB-GENE-990415-200]
Coordinates
chr25:14943183-14946157:-
Coord C1 exon
chr25:14946104-14946157
Coord A exon
chr25:14943314-14946103
Coord C2 exon
chr25:14943183-14943313
Length
2790 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
CAACATATTTCTTTTTTTAGGTC
3' ss Score
10.09
Exon sequences
Seq C1 exon
AATACTATAACCGGGCCACGTGGGAGTCTGGTGTCGCGTCCATGATGCAAAACA
Seq A exon
GTAAGTGGACTTTTTTTTTCTTACATGCGATTTTCAATCAAGAAGGACTAGGGTGAAAAAAGAATGAGATAGCAATCTAGCCATAAAGGCATTTGTTTTGGTATATTGGTAAAGACGTATGTCAGGGCTGTTGGGCGTGTGCATGCTGTCAATTTATTTTTTGCCTGTCATTCATACAGCTCCCTCAATGTAGCATAGAAAGCTAAACTCATTGCTCAAGCCTAACTTTACCTATTTACAGTTTTATGGAACATCGTAAGTCATTATTTAAATTCGTAAGGCTACATTTGAGAGAGCAAAATTAGATTCCTAGTGAGAAATTAAATAAAAAAAAGTCTGCATAGCTACACAACCTAGTTAGAATGTCTAACCCATATGCTCTTTGCATAATTGTGTGCGTCTGTGTGTGTTAGAGAGAGAGTGAGAGAGAGAGGATGTTTCTGCTTGACTTGCTTTTAAATAATTGCTGAATTAATGTTAGCATCGGCGGCCAATCCACCTAGTCCATTAGCAGAGACGAAATTGACATTGCATGATTCTGATGGAACGTCTATCATGTTTATGAAACACCGCAAGAGAGAAATAATAGACTGAGCTTTGATGCAACATTGAATGTTGTAGAGCATGAATAAATCACATGCGCTGATGTGTCTGTGTCTTTGAGATGTGTGAAGGCCAACTAGCAAAACATATACTTAGTGATTTGTGGAAACTACTGAGTAAGTTATGATTACAATAAATGAGACATATTTTCTCTCTTAATGCTGGACAAGAGGTGTATGACATCTGTAACGAAGGTGTGTTGAATGTCATCCTCTCATTTCTTTTGCTTTTACTGTTGTAAGTGCCAGTTATTTTCTCTGTCCTCATACTGACGACTGGTGTGTTTTAGTTACTAAATTTCAGGGGAGGAAATGTATACGTAAATATATATTGCAGGTGTACATGTAAAATATTTTCATGCTAACTAAGCAATTATACAGGTCAGTTAAAGTAGAGCATATGCAACTTCGTGAGCTGTAAATAAATATGTAAACAACACTATACAAAATGTATAAAATCGTAATATTTTAAGCGGAGAAAAAACCTTGAGGCTAATCAGTGTTATTGTACGGCAATGTCTCGCGTGTATCACTAAAAAGATATCATTCGGGTTAGGCCTTTGGTTTGTTAAAAGGTCACAGGCGACAATCCAAGCTTTGTGCTAATAACTCTTGGGTGTATATAAAGTGGGGCGTCCAAATCGACACCATATGTCTTCTTATTAATTGATTAGAAACAGAGTACCGCGCGCAATGATTGCCACTGGGCGAGACCGACACCATTCTCCGTGGGGAATTATATAACGATTAAGACTTAACCTTTCAAGCGAAAATTTGATTTTATATCCTAATCTGCGTGTTGGGGAGCTCAAGATCAAGTGATGTGTGCATTTTTAAAGCCATACGGGATGTAATTTCAAAGTCAATAAATTTTCAATCCATCTATTAAGGAATAGAAAATAGGGTGATTTCCTCTTACCTTGCATGTCAAGTGTACTAAAAAATTAATTTTGAGGTAGAAAGCATGCAGTTATCGTCATTGTGCACAATAATAAAACATTCGTGCATATGCTTTGCATATTTATTATGCATAAACCTACACTACAAAACAGCATCACGCAGACTGGCTCCCAGTGCGTAAATATAGGCATTGGAGGTTTGTCACTTGGGAAAAAAAGAAATGTCACTTTCAATATATTAAGGGCAAGGCGCGCACCCGTGAACGTGCGCGCGCACAGCCCCTGGCTACCTTAAAATTAAGCTTCCCTTAAAGGGAAAATGAGTAGAGTCCAATTTAGTCTGAGTGATATCCAAATGCAGACAGAAAGGGTCGTTTTATCATGCTACTATTTGTCGTGACGATGCGATTTTCAAAAGCAGAGCGATGTCATAAAGTGACATGCCTGCCACAAGTGCTCCAACTGATCTTTTCAATTAGCCTTCCATGCATGATCCAGGGCGACTTCCGCCTATTTCCAGAAATTAAGCTCAAACTTGACGTGCAGCTAGCTTTATTTTAAAGACAAATGTCAGGCAGGCTCATCATATTTTCCCCCTCTTCTATATTTGGAGCTTATTTATTGCAAAGGAGCTTGTGCTCTTGGACTCAATTTAACGCGAGGCTTCGGAGAGAAGGGAGCTGAGAAGTAAAGCAAACCGGGAAGGCTGCTTATTCGTTTTGGCTTCAGGTTTGGTGTCTTTGGTCTGATTTTTGGCAACTTTTCCACTGACATGGTAACATAAGCCAATTTGCTAAATTCTGTGCATCGGTAGATTTTTTTAGAGTTGTTTTACTTAAAGTGTGAGGCTATGGTTTAAATCGTGGCAGCGTTTAAGAAGTTTTAATGTAATGCCGCAAATAGCATTACGCCATCTGATCCGTTTAAGGCTTTGCAAAGATGCGCAAATCTCGGCTCAGTGGGTTGGAGATGTTTTGCTCCAGATCATACGAGAGCGCTGACGCTTAATCAATGTTATGCATGTGTAATTATATTACTATTGTGTATTAGGAGATTATGATATTACCAACACATCTGGAGAACAGTCGAAAACATATGACAGGAATAATTACCGGCTATGCTGATTTTAAAGCGATTTACTCTGCTCTTTTGATGAATGTTGAGATTTGTTGACAATGCTCTTGTAATGCTTGACCTGAAAGCTTCTATTAAACAGCTGTGGCTTGAGTCTGTATTTTGAGTTTAGGCTGCTAAATGCGGGGCGAATTACAACATATTTCTTTTTTTAG
Seq C2 exon
GTCACAGTGGAGTGAACCAGCTCGGCGGTGTGTTCGTCAACGGCAGACCGCTACCCGACTCCACGAGACAGAAAATAGTTGAACTCGCACACAGTGGCGCGCGGCCGTGTGACATATCAAGAATTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103379:ENSDART00000164384:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.944 A=NA C2=0.429
Domain overlap (PFAM):
C1:
PF0029213=PAX=PU(0.1=0.0)
A:
NA
C2:
PF0029213=PAX=PU(34.4=97.7)
Main Inclusion Isoform:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]