DreINT0111623 @ danRer10
Intron Retention
Gene
ENSDARG00000003449 | pde10a
Description
phosphodiesterase 10A [Source:ZFIN;Acc:ZDB-GENE-040426-1115]
Coordinates
chr13:4466109-4469825:+
Coord C1 exon
chr13:4466109-4466160
Coord A exon
chr13:4466161-4469682
Coord C2 exon
chr13:4469683-4469825
Length
3522 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
TGTGTTTATCTGCCTTTCAGATA
3' ss Score
11.11
Exon sequences
Seq C1 exon
AACATACTTTGACAACATAGTGGCAATAGATTCTCTACTTGAACATATCATG
Seq A exon
GTGAGTATGTTTTCCTTCTCCTCATTAGGGTCACATGCTTGGTCATGAGGACAGACGTGCTGTTCTTCTGTCGCTCATCTGTGTCACTATCAACGCCAGAGAAATCTGTGCTATGAAAGACCTTCTCTCATTTGTTTGCCGATAACCCCCACAAGCCACCGCTCACCCAGCAGCCTTGGGCTTGTTTTTAAATCTTCTTTTTTTTTCATTTACGCAAATGTTTGTGTTCTCTAGGCTTCTCTCTCTCTCTCTCGCGCACACACACATATTCATCCACCCCAAGTATCAGATCTCTGGCCCCTTTCTGTCTCTGTCCCCTCCTTCCTGTTGAGCAAAGCAGCACAGGAAGTGATGCAACTAGGTCAGGGAGAGGACAGACAGTCCGTCTGACTTTGCTCCAGCATCTCACTGAGCTCTTGGCGTCGCTCGCAGGAATTAATACGTTTTTTTTTTTTCCAAGCACTTATTTCCAAAAACGGAGGTAGTTTAAATGCGTAAGAAGTCTTTGTTGTTTTGAAGTGATTTCTCACCTGTCAGCGGTTTCATGAAGCAGAAGTTTATCTTGACATATTGTGCCACCAACTTGTGAAATCCAGAGGGAAGAACAAGTTCCTCAGTTGCTTTAGGCTCTCAGCGGCCATTATAAAACATCTTTATTATATTTAAAGGGATAGTTCACACAAAAATAGTAATTTGCTCAATTTTTTCAACCTCAGGTTGTTTCAAAACCTGATCAAGCCTATTTTTTTCTGTTGAACATGTTGAAAAAAAAAAAAAGATCTACCAACACTATCTCACGAAAATGCGTAACTTTTTGACTTATTTTTGGCTAATTCGTATGAATATCATTGGTGCATTTTAGTAGGATTTGCTCATCTGCCAATGACGGTTGGGTTTAGAGGTGGGGTTTATGGAGCCAGATCAGTCTCTAAAATAATACATTTACAAATTGAAATTCATTCACAGTTCACATTTACAAAATTCAGTTTGTAAATTCAAAACGCAATTCATGAATACACAAATCTATTTCCTGAATTCAAAACACGATTCGTTAAATGTACAAATCCATTTCATTAATTCAAAACACAATTTGTAAATTCACAAATCCAATAAATAAATGTAAAACACAAATCATAAATGTGCAATTCCAATTAATAAATTCAAAACAATTCGGAAATTCAAAACAAAACTAGTAAATTAAAACAATACTTGTAAATATATAAATACAATTTGTAAATTCTAAACAAAGTTTATAAATACACAAAATCAATTAATAAATTAAAAAAATTAGGAAATTTAAAACACATTTCATGAATACGCAAATCCATTTTATAAATTGAAAACACAATTCGTAAATATGCTAATTCAATTCATAAATTCAAAACACAATTTGTAAATATGCAAATTCAATTTATGAATTCAAAACACATCTCATGAATACACAAATCTGATTCGTAAATTCAAAATACATTTCATGAATATGCAGATCCAATTAGTAATTCAAAACACAATTCGTAAATACACAATTAAATGTATAAATTCAAAGCATAATTTGTAAATTCGAAACAATTCGTAAAAATGCTAATTGAATTCATGAATTTAAAACACATTTCGTGAATACACAAATCAATTTCATAAAGTCAAAAGACAATTCGTAAATATGCTAATTCATTTTTTCAATTCAAAGCACAATTCGTAAATTCAAAACACAAATCAAAAATATGCAAATTGAATTCATAAATTCAAAACACATTTCATGAATACACAAATCCATTTTGTAAACGTTAAACACAATTCGTAAATATGCAAATCCAATTTGTAAATTCAAAACACAATTCGTAAGTACACAAATGCAATTCGTAAATTCAAAACACAATTTGTAAATACGGAAGTCCAATTTGTAAATTCAAAACTGATTTCGTATGAATTAGCCAAATTGACAAAACGTAAGATATTTACGTTTCCTTTTGAGATCAGGGGTCTGTTCTTCGTACGTGGATTACTCAGTTAGCTGGATTTGGATATAGACGATTTGACATGATCCAGGATCTTTTCGTTCTTCAAAGCTGATCCGAGAGTTGTTGTCATAGCAACAGTTCTGCTAGCTTAAACCTGATCGGGAGCAGGTTCAATTCATATAAACAGGATTAGATCGGCTCAGTTCAAGCAAAGATAATACAGAAGGTATGTACCGAATTCTGATATTTTATTACAGTAGTAGTTATATACACTTGGGAAAATGGTACATATTTTTAACTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAAAGTTATAGTCATTAATAAAATAAATAAAGTTATACATATTAATAAAACGTATGCAATCTGCACCCTCGAAATGAAAGTACAAAGACTGCCACCGGGTGGTGCAAAGAGAAAACTTATTGATATGAACTTTTTAGATCGCTTTAGTACAAATTGTGTATAAAATGCACAATATGTGACTTTTTTTTAAAGCAATAATACATTAATGCAGTCATAAACATGTTTTGATAGTTAATATGACAGTGATTTGATGCTTCACAAAAGTTGCAGACACCTTTACCAATATGAAAACGCGTTTGTAAACAACCAGTGATTCTTTACACCGATTAAAAAACGGCTACTATTATAAAGAAAATCTTCTCTAAATATAGAACTAAATACATTGATTTGCATTGAAATACATGATGAATACACTTGACACATGAAAATGTAAAGCCTGCAGCTCACAACAAAGGTGGAAAGTTATTGCGCGTCATATTTAACAAGCCGTTTACTGCTCATTTGATGTAATTTTGCTCACATGGATAATTGAATATTAATCAGATGATGTCATTACGCTGCTGTGCCGTCAGCCAATCATGGCATTGCTGATCATGATTTCGAGGATCGATAGATCTGTCCTTCACAACACACGCAGCGATCTCAGATCAGTTTATCCAGACATTCTAATCTGATTCGCGAACTTGTTTGAAGAACCAAATTAGCCAGAGAACAGTTATCAAGATTAAAAGATCCAGGATCTGTCAAATCATCTTAGATCATTTAAGCGAGGTACGAAGAACAGACCCCAGGCTGAATATACAAAAAAATAAATAAATAAATAAACGTTAGAAACCTGTAACCATTGACACAAATGATATGTAAGTCAATGGTTACCGTTTTTCAGCATTTTTCCAAATATCTTCTTGTGGTTCAACTGAAAAAAAGAAGTAAATGACAACAAATAATAACAAAATGTTCAGTTTTCTGTGAACTATCCCATTCAACATCAGTTTAATAATGACACTGTTACATATCAAATCAAATTATTCTCCTTCAGTTCTGTAAAAACACAACACAAACAACTTGTTTTTATTAGTTCAGATGAACCACACTGGCATAGTGATGGTGTTAAAAGGCAAATATGTACTCATGAAAGAAATGTCAATAAGGAAATGCATGTGTTTATCTGCCTTTCAG
Seq C2 exon
ATATATGCAAAAAACCTGGTTAATGCGGACAGATGTGCGCTCTTCCAGGTGGATCACAATAACAAAGAGCTGTATTCTGATCTGTTTGATATCGGGGAGGAGAATGAAGGGAAACCTGTCTTCAGGAAAACCAAAGAAATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000003449:ENSDART00000144312:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=PU(6.1=50.0)
A:
NA
C2:
PF0159021=GAF=FE(32.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]