GgaINT0083126 @ galGal3
Intron Retention
Gene
ENSGALG00000011537 | PDE10A
Description
NA
Coordinates
chr3:45165859-45168565:+
Coord C1 exon
chr3:45165859-45165910
Coord A exon
chr3:45165911-45168422
Coord C2 exon
chr3:45168423-45168565
Length
2512 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
GTTTTATCTTTTGTCTGTAGATA
3' ss Score
9.5
Exon sequences
Seq C1 exon
AACGTATTTTGATAATATAGTTGCAATAGATTCTCTACTTGAACATATAATG
Seq A exon
GTAAGTTTTCTTTTTCATTTCTAATTTTGTTGATCGTTGTTGAAGTCCTTCATTCTCCTTTCTGTGAAGTAAGACATTGCACATCATTGAAGTGTCTGAGCTGTTTATATCAGACACGTAATGGAAACAGAATTAACATTTCTCTATGGAGGATGAAGGGAAGGATCAGCTTGATTATGGTTGTTGCAACAATTTTATTTCACAGCTCTTATAAGTAATCACATAACTGTCTCTGAACTGTGCGGTTTCTATTGTGTGTTGAAGGTTTTAAAATTGTAACAAAAAGGCTTCTGTTTTTGTTTCAGCTTGTTGTTCCTTTTTCCTAAATTCAATTTTCTACATGCTGCAAAACACTTATCAAGAAATTGTTCTCTATAGGAAAGTCTAGAGTTCAAACATTACTTCTACAGTATTTGTTCTAGCTATTCAGTGAGCTGTTGAAGACATGACATCCACTTAGTTTTGCAAAAGTATCTGCACCTGTAACAAGAGTAATAGTCAGTCAATATTTCATAAAAAAAAAAAACAAACAAACTTAGAAGACGTCAAGTCTATTGAAATAGTTAATATGCTGTATTTAGTTGGTGAATTATAGTACAGTTCAGAAACAATATAATTTTTTTAATCATTTTCATATTCTGAATTGTTTCCTGAATGATATGTACAAATGTCTGTGGACTGGTTGTCTGTAGCACGTTTTAAGTGTTTACAATATGAATTGTGCTTTTTAGCATTAGTCACATTCGTTAAATAATGCAGTTCTTTTCCCTGAGTGTAAATCTTAATCATGTCCCTGGTATTATTACTTCAATCTGCATATTCAAATATAGTCACCAATGATGCTCCATTGCATACCTTGATCTCCAGAGTGATACTCTTAGCTAGAATATTCAGACCACAAATTAAGAATGCAAACATTGTAAAAGTGGTTTTATTTAGAAACCTGAATTAGTTATGGAAAATACTCTGCAGTGTTTGCCTTATTCTTGTTAATACATAGTCAAGACTTCTGCACATTCTGAACATTGATTTTTCCAATTCAAACGAACTGCTTAAAAATAGCTTAACATTTAAAGGAACTGGTGTAATATAGCATATGGCATTGAGAACAAATATTGATATTCTTCCCAACTCTTTGCTATGAAGAGAGGTCTGGTGGAAAACACAATTGGCAGTAAAATATGCTTACTCTTTGCTCATCTTTTCCAACACTTGACTGCATCCTGATTCTGCATTTTAACCTGCATACAGGCTTCATTCTGATCTTCCTTTGTAATCTGTAGCAGTTGGCTGTTTCAATTAATTGAATTGCATTTGCACACTTATTGCCGTTTTTGGGAGGAGTACAATTGTATAATTATGTAGTGTATTCTGTAACTCAGAATGAGGGAAGAATGACAGTAGATTTCACCTCACTACTTCTCCCTTCAGAGACTGGACTAAAAGTTAGATTTGCTCATATAATAATAAAGATAACAGTACAGGGATTTTGGGATTCTTATCATTTTCATTTACATTAATATTTCACAGTGAATATACTATAAAGGCATTCTAGAAAATAGATGCAAGGAAGAAAGCAGAAGTTCAAGAAACCTTTTCTCAAGTGAACCCTTTCTCTTTTTTTGCTCAAGTATATGCTCTGTTTTGAGCAAAAGAACAGAAAGTTCCAGTGGTCAAGACCTCTACAGTTGTTACTCTTCTAAGCAAGCAGTATTTCTCAAAAGTTACTTCTTAGCTTGCAGTCTACCTTACCTTCTAGGTGGTTCTTGACTGGATGATGCCTTGTGGGTGTTATTTAGCTGAAGGGGAAGCTGCTGTAGCTCTGGGTCTGAAGCTGCTAGGTCTCAGCTTTTGTGCAAGGACTGCCACTAGCATCAGGAGATTGCAGCTATTTACAGTACTGTTGCACATGGTAATCCATCATGACACTTTTAATTTTCCTGTGTTTGTTTATTTTTATGTGCCACAAGCACATTAAGTTTCTTCAGAAACACGCACTAGCCTCTCTGTTATGTCCTTCTTCACTGGATATTTGATACCACTGAAGACAAAGAAAAAAAGTCAGAACTATTCTTAAGTATTGCTATAACCTGTCTATTTAAAAATCATAGAATCATAGAATTGTTCAGGTTTGAAAAGACCTTAAAGATCATCTAGTCCAACTGCAAACTAACCATACTACCCTAAATTATGTAAAGGAGAAACATTTCTAAAAACAGGGAGAACGGTACCATTCCAAAAAGCATTCACTGAAGTGGAAATGCAGCTAAAGAAGAAGGCCTTTTCTCTTTTAGCAGACGTTCAAACCTCTAAGGAAACCCCTGCATTTTACAATAAGAAGAACACTATAATTAACATAAAGTACTGAAGAAGAACTTCTAGACTTTCCATTTGAATTTTGTGCTAAAATATCACTGTGAAGGTGGATGGTGCTTAAAACAGATCTATTTATCAGATAAGTGATTGAAGTTAACCCATGACCATTAACTATAGTTTTATCTTTTGTCTGTAG
Seq C2 exon
ATATATGCAAAAAACCTGGTGAATGCAGATAGGTGTGCACTCTTCCAGGTTGACCACAAAAATAAGGAGCTGTATTCAGATCTTTTTGATATTGGAGAAGAAAATGATGGAAAACCTGTTTTTAAGAAGACCAAAGAAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011537:ENSGALT00000018810:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=PU(6.1=50.0)
A:
NA
C2:
PF0159021=GAF=FE(32.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]