DreINT0111787 @ danRer10
Intron Retention
Gene
ENSDARG00000051915 | pde5ab
Description
phosphodiesterase 5A, cGMP-specific, b [Source:ZFIN;Acc:ZDB-GENE-060824-4]
Coordinates
chr7:57313162-57313428:+
Coord C1 exon
chr7:57313162-57313236
Coord A exon
chr7:57313237-57313344
Coord C2 exon
chr7:57313345-57313428
Length
108 bp
Sequences
Splice sites
5' ss Seq
ATTGTAAGC
5' ss Score
5.06
3' ss Seq
GTAACTTTACTCTTTCCTAGGAT
3' ss Score
8
Exon sequences
Seq C1 exon
ATAGCAGAACTGGTTGCCACGGAGTTCTTTGAGCAAGGCGATAAGGAGCGGAGAGAGCTAAACATTGAACCTATT
Seq A exon
GTAAGCTCTTGTATTATAGAAAGATTTATTGAGTTTTATGAAGACTTGTGCTTAGAAACAGGCCAGTAACTGTGAAAATGACTAACTAGTAACTTTACTCTTTCCTAG
Seq C2 exon
GATCTGATGAACAGGGAGAAACAGGATAAAATTCCCAGCATGCAAGTGTCATTTATTGATGCCATTTGTACACAGTTATATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000051915:ENSDART00000138188:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.080 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(10.0=100)
A:
NA
C2:
PF0023314=PDEase_I=FE(11.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAGCAGAACTGGTTGCCACG
R:
ATAACTGTGTACAAATGGCATCAA
Band lengths:
154-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]