DreINT0112023 @ danRer10
Intron Retention
Gene
ENSDARG00000013128 | pdk1
Description
pyruvate dehydrogenase kinase, isozyme 1 [Source:ZFIN;Acc:ZDB-GENE-091204-402]
Coordinates
chr9:3134435-3137584:-
Coord C1 exon
chr9:3137400-3137584
Coord A exon
chr9:3134531-3137399
Coord C2 exon
chr9:3134435-3134530
Length
2869 bp
Sequences
Splice sites
5' ss Seq
ACAGTGAGA
5' ss Score
3.45
3' ss Seq
TGACGTTTGTGTGTTTTCAGCTC
3' ss Score
9.59
Exon sequences
Seq C1 exon
TTTCACAGATGCTGTGATTAAGATCAGAAACCGCCACAATGATGTGGTGCCCACCATGGCTCAGGGTGTTGTGGAATACAAGGAGACCTACGGCACTGACCCCATCACCAGTCAGAATATGCAGTACTTTCTGGACCGTTTCTACATGAGCAGGATTTCAATCAGAATGCTCCTGAACCAGCACA
Seq A exon
GTGAGACACACACAAACACACATATACACATATATGGTGGTATTGGTGGTTTACAGGGCCTCTCAAAAGACTTAATGTATATTATACAGTAAAAACTGCTTTATTATCTGGCTCTAAACCAGTATTTCCCAATCATGTTCCTGAAGACACACCAACAGTACATATTTGTAACTTCTTCCTAATCAAACACACCTAAATCAACTCATCTCATTAGAAGAGACTCCAAAACCTGACGTTAATAAGTCAGGTGAGGGAGATATCCAAAATATGTACTGTTGATGTGCCTCCAGGAATAGGGTTGGGAAACATTACAGGAAACATAAGGCAAAATATGAATGTCAGAAACCCCTAAGTATGATTTTGAATGGGTTTGAATTACAAGGACATCAGTCATGCCCTCGTAAACCACCATAATGGAGTACAACTATGTTATTATAAACAAAAACTGTCATTGTAAACCACCAAAACCAACACTCACACACATATATTGGTATTGGTGGTTTATGAGGGTTCTCAGTAGGCATAATGTATTTTATGATGTAAAAACACACTTATTATATTACTTATCCCACTAGGAAAAAACCCAATCCTAAACCTAACCCTCACAAGAAACCTGTGGCGAATGATTTTATAGAGTTTTGAATTACTAGGACATCAGGCATGTCTTTGTAAACCATTGTTATGCAGTACAACTATGTCATTGGTGAAAAAAAAATGCTATTTTAAACCACCAAAACCAACACATACACATATATTGGATATTGGTGGTTTATGAGGACTCTCAGTACGCATAATGTGTTTTATGATGTAAAAACACACTTATTATATTACTTATCCCACTAGCAATAAACCCAATCCTAAACCTAACCCATAAAGGAAACCTGTGGCGAATGATTTTGAAGAGTTTTGAATTACAAGGACATCAGGCATGTCCTTGTAAACCATTGTTATGCAGTACAACTATGTCATTGGTGACAAAATTTTTTTTTTAAACCACCAAAACCCACACACACATACACACACACACACACACACATATATATTGGTATTGGTGGTTTATGAGGACTCTTAAAAGGCAAAATGTATTTTATGATGTAAAAACACACTTATTATATTACTTTATCCCACTAGCAATAAACCCTATCCTAAACCTAACAGGAAACCTGTGGCGAATGATTTTGAAGAGTTTTGAATTACAAGGACATCAGGCATGTCCTTGTAAACCATTGTTATGCAGTACAACTATGTCATTGGTGACAAAATTTTTTTTTTAAACCACCAAAACCCACACACACATACACACACACACACACACACATATATATTGGTATTGGTGGTTTATGAGGACTCTTAAAAGGCAAAATGTATTTTATGATGTAAAAACACACTTATTATATTACTTTATCCCACTAGCAATAAACCCTATCCTAAACCTAACAGGAAACCTGTGGCGAATGATTTTGAAGAGTTTTGAATTACAAGGACATCAGGCCTGTCCTTGTAAACCATTGTTATGCAGTACAACTGTCATTGGTGAAAAAAATGCTATTTTAAACCACCAAAACCAACACACACACACACACACACACACACACACACACATATATATTGGTATTGGTGGTTTATGAGGACTCTCAAAAGGCATAATGTATTTTATGATGTAAAAACACACTTATTATATTACTTTATCCCACTAGCAATAAACCCTATCCTAAACCTAACCCTAACAGGAAACCTGTGGCAAATGATTTTAAAGAGTTTTGAATTACAAGGACATCAGTCATGCCCTCGTAAACCACCATAATGGAGTACAACTATGTTATTATACACAAAAGCTGTCATTGTAAATCACCAAAACCAACACACACACATATATTGGTATTGGTGGTTTATGAGGACTCTCAATAGCCATAATTTATTTAATGATGTAAAAACACACTTATTATATTACTTATCCCACTAGCAATAAACCTAATCATAAACCTAACCCTCACAGAAAAACCTGTGGCGAATGATTTTAAAGAGTTTTGAATTTAAACCATTGTTATGCAGTACAACTATGTCATTGGTCAAAAAATGCCATTGTAAACCATCAAAACCAACACATATCTTGATGTTGGTGGTTTATGAGGACTCTCAATTGGCATAATGTATTTTATAGTGGAAAAACGCCCACTTCTATCCCTAAACCCAATCCTCACAATAAACCTAAGGCAAGACCCTATTAAGTATGATTTTTGAGCTATTTGAGTTACGAGAACGCAAAGAATGTCCTCATAAACCACCTTGCTAGAGTACAAGGTTATACCCATGTCATTATACACTTTTGTATTTTCGTAAACGCACACTTTTACAGCCATCTTTATGGGGACCTCCCTTAGACATGATGTTTTTACTGTACAGGGTGTATATTCTATAGCCCTACCACTAAACCCAACCCTCACTTGAAATAATCTGCATATTTACTTTTTAAAATACTTTATTCTGTGTGATTTATGAGCTGTTTTCCTCATGGAGACCAAAAATAAAAATGCAAGGTCAAAATTGACTGGTATTGATATACTCGTGGGGACATGTGGTCCTTGCAATGTAAGGAATGCACAGTGCATACACACGCACATTTAGGGTGCTTTATAACAAGGTCCCGCTCAAATGTCAGTGGTTTGAATGGGACTTCTGGAAGGTTCACTCATAGTGTAGTTTGGTCCAGCAGCTCCGGCTGGCATGTTTACGAGTTTCACAACCGACAGTGCCCCAGATTTCTGAAACTGTCATTGATTGATCTGTCACCCGTTAAACAATGAGCTGTATTGTTCCACCACCAGCAAGAGAATTGTCAGTCAATGATGTGACGTTTGTGTGTTTTCAG
Seq C2 exon
CTCTTCTGTTCGGAGGAAAGGTGAGGGACAATCCTGCTCATCCCAAACAGATCGGCAGCATTGACCCCAGCTGTCGGGTCACGGATGTGGTAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013128:ENSDART00000020861:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.152
Domain overlap (PFAM):
C1:
PF104364=BCDHK_Adom3=FE(37.1=100)
A:
NA
C2:
PF104364=BCDHK_Adom3=PD(13.2=66.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]