GgaINT0097521 @ galGal4
Intron Retention
Gene
ENSGALG00000009700 | PDK4
Description
pyruvate dehydrogenase kinase, isozyme 4 [Source:RefSeq peptide;Acc:NP_001186838]
Coordinates
chr2:24040046-24040747:-
Coord C1 exon
chr2:24040563-24040747
Coord A exon
chr2:24040136-24040562
Coord C2 exon
chr2:24040046-24040135
Length
427 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
TTTGTTTTCATCCAAAACAGCCC
3' ss Score
6.82
Exon sequences
Seq C1 exon
ATTTATAGATACATTAATCAGAGTTCGAAACAGACATCACGATGTAGTCCCTACAATGGCACAAGGAGTAATTGAATACAAAGATATGTTTAAAGTAGATCCTGTCACCAATCAAAACATTCAATACTTCTTGGATCGCTTTTACATGAGCCGCATTTCCACCCGGATGCTGATGAACCAACACA
Seq A exon
GTAAGTAGGAATTCTTATCTGTGGAAAGACTATAGAATCATGGGGCAGTTTGGGTTGGGAGGGACCTTAAAGATCTTCTAGTTCCAACTTCTGTCTTCAACCAATGTAAAACAACTGAATGTAAGCACAGCTCAGAACTGCCAGAGAGAAATCTGTTTCAGATGACTTTGTGAGACACTGAAAAGTTAAACTAGTCCGTAGTCTAGAAAGTAACGTCTTATGTGGAAGATGAGGAACTTCTTTTGCATTTGAAAAGCCTTTACACCTTGAACTGCACATAAGTCTGCTGCCAGTAGATTGCCTTTTTAAATCTAAAAAGGCATAAACAGTACTCATATGATTGTCTGCTATGATTATACTCAATATAAACTTGTTTTGTAGTATAGCAAGTGTGACTAAATACAGTATTTGTTTTCATCCAAAACAG
Seq C2 exon
CCCTTCTTTTTGATGATAAATCCAGATCAGGTCACCCGAGGCACATTGGAAGTATTGATCCTTGCTGTGATGTTGTTGAGGTAGTGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009700:ENSGALT00000015790:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF104364=BCDHK_Adom3=FE(37.6=100)
A:
NA
C2:
PF104364=BCDHK_Adom3=PD(12.1=64.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATTAATCAGAGTTCGAAACAGACA
R:
TCACTACCTCAACAACATCACAGC
Band lengths:
262-689
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]