DreINT0114609 @ danRer10
Intron Retention
Gene
ENSDARG00000060946 | pip5kl1
Description
phosphatidylinositol-4-phosphate 5-kinase-like 1 [Source:ZFIN;Acc:ZDB-GENE-060526-248]
Coordinates
chr5:31100721-31103296:-
Coord C1 exon
chr5:31103142-31103296
Coord A exon
chr5:31100846-31103141
Coord C2 exon
chr5:31100721-31100845
Length
2296 bp
Sequences
Splice sites
5' ss Seq
AACGTGAGT
5' ss Score
9.54
3' ss Seq
CTTTTCTCATTTCTATTCAGCAA
3' ss Score
8.23
Exon sequences
Seq C1 exon
GACTTCAGGATGGAGACATACGCGGGGCCGGTGTTTGCAAGTCTGCGTCGTTCTTTGGGAATGACGGAGAAGGAGTATCAGCAGTCGCTCTCCTCTGAAGGCTGTTACCTGCAATTCATCAGCAACTCTAAGAGCAAGGCAGATTTCTTCCTAAC
Seq A exon
GTGAGTCAGCACGAACATCTCACATGCTGGAGAATTTGCAGAACGGACAGAAACAGACACCGCTCACAGATACGTGAATGAAAGAAATCACTTAGCTTAATATGGCTGCCAACCTGCTGTTTTTTGAATATGATTTTTGAATATAATAATAATGACAAATTTACAATCAATATACATACATTATGTACAGGTATAGTTAAAGTCAAAATTATTACTTCTCTTTTAAAAGTATGGGAAATATATATGCAGCAAAAATAAAACTATTTCCAGAACCAGAAACTGGTTCCTCCATTTGAATGATTGTTTGAGCATTTGATTTATTTAATTATTGCAGGATTTTACTGAGTTGTTCATGAAAATTAAATATTTGATTTTTTTTTTATTTAAAAATGCATTTATATCTATTATTTGTAAGTAGGTGTGTTTGATTTATTATTTGGCTAGTTGTTTTGAAAGTTCAATTTATTATTTGATTTTGTTTAGACATTTGAATTTACATTTGAATTTTGTTAGGAAAAAACTTCCATATACAGTCGAAGTCAGAATGATTACCCCCCCCCCCCTGTTTATTTTTCTAAACATAATAGTTTAATAACTTCTCTAATAACTGGTTTATTTTATCTTTGCCATAATGACTGTATATATTATTTTATAAAATATTTTTCAAGACACTTCTATACAGCTTAAAGTGACATTTAAAGGCTTCACTAGTTTAATTAGCTTAACTAGGCAGGTTAGGGTAATTAGGTAAGTTATTGTATAACGATGGTTTGTTCTGCAGACTATCAAAAATATAGCTTAAAGAGGCTAATAATTTTGACCCTAAAATGGCTTATAAAAAAATTAAATACTGCTTTTATTCTTGTCGAATAAAACAAATAAGACTTTCTCCAGAAGGAAAAATAATATTATACATACAGTGAAAATGTCCTTGCTCTGATAAAAACCATTTGGGACATATTAAGAAAAGAAAAAAAATCTAAGTGGGCTAATAATTCTGACCTCAACTGTACAGGTATATACACATTGAATACAAATTAACAGTCCACATGTGCTAAGGGTTTCTTTTTGTACATTGACCTAAGTAAATGTAAGATGTAAATTCACATTAATAGTCTTTCTGCAGCTGTGCCACCCCCCTCCCCCCAAAAAAGATCAATTACAAAAGAATAATAATTTCAAATTACGTTATCATTATTGCAGTAGTATTTTGTTGTTTTTGTTGTTAATAATAATGTCCTTAATGTTATTATTGGTGTTACTATTATTTTTGTCGTTGTGGTTCTGTTTAGTAATACTGCAACCTTTATTTTTTCAAGTGAGGAAGTCTGAGATTTATAAACTTAAAGTAACAATTAAATCAGTGTGGTTTTATGACTTTTGAATAATACTGTATCTTAATTCTATTGTATAGCTAGTATATAATAATAAATCAATAAATACTTAAACTAGCACAAATTCTTAATATTACAACTAGTATAACAAACTGTGCAACAGTTATTTATGTATTAACTTATTTCCTTCTGTGATTTAAAAAAATTTAGTTATATTTTATATAACTATATTTTATATATTTATGAAATTCTAGAAGCTTATTTATTGTTAGGTTTTTATAGTGTTTGATGTTTTTTATGTTCTTGTTGGGTCTGATGCAACGTAACTTTGTTCTGCGTTACAATTTATGATGTTTTGAATGACAAAAATAAAGGAAACTGAACTGAAGTTAGCAGAAGCTTTTTTTTTTTGGGCTGAACTTGCAAAGTTTTGCTCACAAAACTAATCTTTTTTACTTAATGGAAAACATTTTAGTAATTGTACAGACATTTTAATGCTTTTTGCTAAACCAACAAAAAACAAACAAACAAGTAATTTCAACTTTTTGTTAAGTCTGATTTTTTACAGTGTGAAGTTAAAATATTTCTGGAAATCTTTGCTCTGTTAAATATAATTTGGGAAAAAAAATATATATATATTTTAACGTTACATACTGTACGTATAGATTACAGATAGATTATATAATATAAATATAATAAAAGAAGTTACTAAAAATATAAAAGACAGCATGAGAATGATTCTGATGGATCATGTGTTACTATAGACTGGAATAATAATAATGTAATGATACAGTATGTTATAATAATACACTTACCATATTTTTAAAAAAAAGTAGCCTTGTGAGCATAAAAGATCTTTTTTTAAACATTAAAAGTTGCACTGACCCTTAAGGTTGAAGTGAATGTCAAATGCACAGCTGTCAGTAAACTTTGTAACAAATACTTTTCTCATTTCTATTCAG
Seq C2 exon
CAATGACAAGCGATTCTTCTTAAAGACACAGAGCAAAAGAGAAGTGCGATTTCTCTTGTCTAACCTGAGAATCTACATGGAGCATCTGGAGAAATACCCTCACTCTCTGCTCGTCAAGTTTTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060946:ENSDART00000141328:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0150413=PIP5K=PU(7.1=46.2)
A:
NA
C2:
PF0150413=PIP5K=PU(13.4=97.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]