HsaINT0125420 @ hg19
Intron Retention
Gene
ENSG00000167103 | PIP5KL1
Description
phosphatidylinositol-4-phosphate 5-kinase-like 1 [Source:HGNC Symbol;Acc:28711]
Coordinates
chr9:130689927-130690498:-
Coord C1 exon
chr9:130690344-130690498
Coord A exon
chr9:130690052-130690343
Coord C2 exon
chr9:130689927-130690051
Length
292 bp
Sequences
Splice sites
5' ss Seq
GTCGTGAGC
5' ss Score
2.91
3' ss Seq
CTCTTTCTCTTGCCCCCCAGCCA
3' ss Score
9.06
Exon sequences
Seq C1 exon
GGCTTCGAGCTGGGCACGCTGGCCGGCCCCGCCTTTGCCTGGCTGCGCCGCTCCCTGGGCCTGGCGGAGGAGGACTATCAGGCTGCCCTGGGCCCCGGCGGCCCCTACCTGCAGTTCCTCAGCACCTCCAAGAGCAAGGCCAGCTTCTTCCTGTC
Seq A exon
GTGAGCTTGCGGCAGGGGTGGGGCAGGGGTGGGAGTGGTACCCCTGGCTGGGAGGGCAGAATTCCCAGTGGCGGGGAAGGCCCCCTGAAGAGAGAAACAGAGCGGCCCTAATCTGGGAGGGTCAGGGCCGGATGGTGGACAGATCGGGGAGGAGAGGAGGGCGAGGGCCGAAGGCGAGAGAGGCGGTGCCGAGACCTGGGAGCGAGATCCACGTGCACAGGTCGGGGAAGGGGGCCGGGTGGGAGCCGCTCCAGCCAGGCCTGGGCAGTGACCTCTTTCTCTTGCCCCCCAG
Seq C2 exon
CCACGACCAGCGCTTCTTCCTGAAGACCCAGGGGCGCCGAGAGGTGCAGGCTCTGCTCGCCCACCTGCCCCGCTACGTGCAGCACCTGCAGCGGCACCCGCACTCGCTGCTGGCGCGGTTGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167103-PIP5KL1:NM_001135219:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0150413=PIP5K=PU(10.0=42.3)
A:
NA
C2:
PF0150413=PIP5K=FE(15.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCGAGCTGGGCACGCT
R:
AGAGCCTGCACCTCTCGG
Band lengths:
207-499
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)