DreINT0115010 @ danRer10
Intron Retention
Gene
ENSDARG00000079585 | pkn3
Description
protein kinase N3 [Source:ZFIN;Acc:ZDB-GENE-030131-1902]
Coordinates
chr5:31248539-31252643:-
Coord C1 exon
chr5:31252489-31252643
Coord A exon
chr5:31248669-31252488
Coord C2 exon
chr5:31248539-31248668
Length
3820 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
ACTCTCTTGTCACTTCTCAGGAT
3' ss Score
9.45
Exon sequences
Seq C1 exon
ATGATGCCACCTCCCCAGACCCGTGCCATTGGGAAGAAGTCACATCACCCTTGGGCAGTCATGTCCGTACACTGAAAAAACAGCTTACCATGGAGCTCAAAGTGAAGCAAGGAGCTGAGAACATTATCCAGACTTACACAAACAGTTCTGTCAAG
Seq A exon
GTGAGGATTTCCCCCCCAAGGGCCTTTTTATTTACCTGCTGTGCATCTCTGAAATAATTAACTCTCCTTTATTCCTCTGTGTATTTAAATCAGTTTTGGATGCTGCCAAATGGCTATGAAATATGATAATAAGCACACAAAGGAGGCCCCTCCCCCCGACCCTCATCTTTTATAACCCTTTTAAAGTGACGTCCTATAACCTCTAGCTAGCCATGAGTGTATTTTCCACTTATTCTTTGAGTCCCAGACATTGCTCTTATAATGCTGCGGCGTCTGGCACAGAACACAGTGTGCTGGCAGCACTGTGATTTATGTCTGTGCTGGATTCAGACAGCTTGAGTACCGAGCTTTGATCTCCCTCACACACACACACACTCACAAGCGCACACTAAAACATCAGCACCTTGGAGTCTGTGGAGGAAGAGCTTGCTGGTACTGATTCGGTTTCTCCTGTCCTGGGCCTGGCGACAGCAGCAGCCCATGTGACTTTGCTCCAACCAATACCAACGCATTCATGTTTGGGCCAGCCAGCAGCAGCAGCAGTTAGAGGTGGCGAACTCCTGTAGAAGAGAATCTGTAAACGGAGGGAGAGAGAGAGACGGGGAGAAGGAACAAATGAGAAAAGGGGAGGGGAGTAGTGAGTGAATGAGCGAGTGAGTGAGCGTTCAGGATGCAAGGACAGTAGAACAATAAGAAGAAAGAATGGGGTGGCTTCTCGGATGCTGATTCGTGATCAGCGTTCTGTGGGAGAAACTGACGAGAGCATGTCTGAGGACGGAGAGACGAACGCATCAGGAGGAAATGTCTGATGGGGGTCAAGGAAGAGCAAGGGGATGTCATTCAGCTATCTGAAAGTTCACAAAACATGACAGATGACCTCTTGAGCTGCATTGAGAGGGGGAGAGCGCTATGGACGGTATAGTTTCCTTTTTTCCCCATTACCTCCTGATTATTGTTTTTTTTTTTTGTAGGTTTCGGAAAAGTCACGTTTCATGTTGAAATGTTGTTTACATTTGTGTGTTGGGACTCTATGAGAAACCATGTTGGGACAACATGATCAGTGAACCCGTTGTTTTCATTTTGCATAATGTGTTGGCTGGACTTGAGGATTTCTTGCTCTTTTTTTTTTTTTTTTTGTATTTATTTATTTATTTTTTGCAATACTATGAGTGTAACGTCACGGCTCATAAAGCTCTGAGATGAAAACTGCACAGTCAGTGTTTGATGTTTGGGTGTGGTGAACACCTGGCTGCTTCTCGTGAGGAGGAAGAGGAGAGTTTAATGAAAACCGCTGCACTTATGACCTGTTGGTCTTGTGGGAGTTTATCTTTTTGAAGAAGCTCAATGTGTGTGTTTCTGTTTGAAAAATATCATTAAAGTAGCTCTTCAACAAATTCAAACCCTTAAAAAAAAACGGAAAGTTTTAAATTCATAGTCATTACCCATGGGACGGACGTAAAAGTTGCATTCTCTGGGAAAAAAAAGTCGAATCATCTTTTGTATTTTTTTTGTTTTGTATTTTCTGTTTTGTATTTTTTTTTGTTTTAGCAAAGCAAATATGGAAATATCTGTAAATCAAGATTCACTTACTAAAGATGCAAAATGAAGAAATCCCGGTCACACTTTACAATAAGATTTACATGCATATTTATTAAAAGGGGAAGAATAACCTATTTGTGACTTGTGTAAGAATATTTTGATGATAAAACATATTTTAAAAGAATGTGTATTTTTTTTAATGATATTGGAGAATAGAGGAAATATTTGAAGTGAAATGTTTGAAAAGGCAATTTTAGAATATTTATCTTTAATCAAGCTCTTTTAATTTTTGTTGCTATTTGTATGATTTTTTTTTGTACAATGTATGTTAAGAAACTGATATGACAGTATGTTATATATTGTATATTTAGTATATGTTTTGCCATTAAAATAGACCATGCTGCTGATATGGCATTAAAAAATAAATACATAAATTACAATAAGGTTTCATTAGTTAATGTATTTACTAATATGAACTAATTATGAACAATACTTGTACAACATTCATTAATTATAGTACAGCATTTACTAATGGATTATAAACATCCAAAATCATCCTTGTTAACATTAACGCACCAAGAGTTGACATGAACTAACAATGAACAATTGTATTTTCATTAACTAACGCTAACTAACATAAATCAATACTGTAATGAATGCATTGTTCAGTGGTTGTTAATGTTTGTAAATGCATTAACTAAAACAACTTTATTGTAAAGTGTTACCAAAATTCCCTTGTTTTTTGAGAAATGAAATAAAATTAAGTGATTATTGACTTAAAACAAGAACAAATCTCCAATTAAAATTAATCCATCTAATCCAAATCGTTTTCTTAGCCAATTGCCTTTTTTAATAACTTTTTTATAAACTTAAATCATTTTGATTTTTACAGAAAAAAAGAGTTCTTATCTAAAGTAATTTCACTGCAAGTAAATGCATTTTGATCTAAGAATCTTTCAATATTTACACTGGAAAGCAAGACCAACACATGGTCTCGGCTCTTCATTCAGACTTTTTTGCTGTGGGATAAGAATTTACAGTACATGAAATTTCCATTCATTAAAAAGGGTCTTAATGTCTTGAATTTCAACAACAAAATTTTAAGCCTTAAAGTATTATATTCACTGTAATATTGTGTTTTATTTCTTATAATTTTAAACCGGTCTTAATTTTCCCTGTCCAAGTAAAGCTACCCAATTGGGCTTACATCCAGTCTATCCATCTCAGTAAAGTCAGGAAAAGAAAACTAAAATCATTTACACAATTTCTCATGATAATAACAAAGCAATATATTGCTTTACGTCATCTTTCATTCACACAAAAACTATTTGCAGAAGTCAGGGCAAGTAGACATCAAATTTATAAATAGGCATGAAACTTAAGGTTTTATAACAGAAATGAATTGGTTAAATAGAAGTTATACTCAATCAATTTGAACCAAAAGCCAACAAATATATTATATTTGATTGCTTTTGTAATTGCCTCCACGATAAGTATACTTTTAACAATGTTTAACTTGTCATTTGAGAAATAATTACATTTTGTTATTGTTGCAAGCAAAAAAAAATCCATTGACCCAGCCAGGCCATTAGACAAATTCTTGTTTAGCTCTTAAAAAGTCTCAAATTTGACTTGATGAAACCTGCAGATACCTTGATTAAATGTTTAAGAGAAAAGTTATTCAAACCTCAAGCTATTGTGTGTGTGTGTGTTTACTCGTTCAATTTTGATTCTCAAATCCCAAAATAAATCTTCAGTCTCTGCTGTTTCAGTTGAAGCACAATAAAATGTATTGGACTTCATCTCCCATCCACTAATCAACACAATAAGCTTTGTATTTTGTTATTTGATGAGATCAGAAAAGTAAAAACACAAAGTACTTTTGGATTGGCTTTTTGGATTAGTGTCAGACCAAAATGGAAAATTGTTCAACATGGGTTTTTTTATTAAATAGTTTTATTGTTATTTTATTATTGTTGTTATTTTAAGTACCAATCATAAACATCAGGGGAGAAAAATCTGGAAATTGTGTTGTGGGAACATTCATATTTATAATATAATATTATTAATTAAAAATTATAATAATAACATAATAAAGTAATATAACTATCATATAGTTTAAAAATAAAATATAAGAATAATAATGAAGTTATCATTTTTTTATTCTCTATTTTTTCTTCGCAGTTTCTATTTGTCAGACTGAGTCTTCACTGTTTGTTCTAATGCAAATCCAAGCTACAAAGTACAATCTCTTTTTATCGACTCTCTTGTCACTTCTCAG
Seq C2 exon
GATCGGAAGATGTTGTCCACAGCCCAGCAGATGCTGCAGGATAGTCGGACGAAAATCGAGCTGCTCCGCATGCAGATTGTCAAAGTCACACAGGCCAGAGAAGGAGAGAGAGAGACCACACAGCAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079585:ENSDART00000112546:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.442 A=NA C2=0.545
Domain overlap (PFAM):
C1:
PF154561=Uds1=PU(48.8=75.0),PF0218511=HR1=PU(43.1=59.6)
A:
NA
C2:
PF154561=Uds1=PD(48.8=88.6),PF0218511=HR1=PD(54.2=88.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]