RnoINT0133708 @ rn6
Intron Retention
Gene
ENSRNOG00000025892 | Set
Description
SET nuclear proto-oncogene [Source:RGD Symbol;Acc:1307467]
Coordinates
chr3:8635503-8645953:+
Coord C1 exon
chr3:8635503-8635616
Coord A exon
chr3:8635617-8645841
Coord C2 exon
chr3:8645842-8645953
Length
10225 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTT
5' ss Score
8.4
3' ss Seq
GCGAGTGTCACATCCCCTAGGAG
3' ss Score
4.82
Exon sequences
Seq C1 exon
TATTTTGATGAAAATCCTTACTTTGAAAATAAAGTTCTCTCCAAAGAATTTCATCTGAATGAGAGCGGTGACCCATCTTCAAAGTCCACCGAAATCAAATGGAAATCTGGAAAG
Seq A exon
GTACTTTGTATATCATGACTTACCTGGACCTCCTGACGGGTGTGCAGTGCCTTAGATTCCAGGGTGCCCAGGAGTGCAGTGATAAGTTTGCTTTCATGTGCAGTCAGTGTCGCCCACTCAGGTTTTTCAGTCTCCATTTTTTGGAGACATGGGTTTGGTTTCTTGATTTAGGTAGGAAGTCATTTTATGAAGTCAGTTAGTAGATGTGTCCTGGGAAAGCAGTTTACAAGACTTTACCTAGTGCACATTTTATCATTGTTCTTAGTAGTGTGATCTTCTTTACTGGTCTCCGTTGTACTTTATGTGGGGTTGAGGTATGATGGGGAGCAAATAGAGTGTTCATGTTTTCATTTAGGATTTGACAAAACGCTCAAGTCAAACGCAGAATAAGGCCAGCAGGAAGAGGCAGCACGAAGAGCCAGAGAGCTTCTTTACCTGGTTTACTGACCATTCAGACGCAGGTGCTGACGAGTTAGGAGAGGTCATCAAAGATGATATTTGGCCAAATCCTTTGCAGTACTATTTGGTGAGTTAATGTTGAGTGGCTTGAAGGAGGTGATGTATCCACAGTGAGTTCAGAAAAAACAACACCGCCTGGCATTTTCAGGTTCCCGATATGGATGATGAAGAAGGAGAGGCAGAGGATGACGATGATGACGATGAAGAGGAGGAAGGGTTGGAAGACATTGATGAAGAAGGAGACGAGGACGAAGGTGAAGAAGACGATGATGAGGATGAAGGGGAGGAAGGAGAGGTAAGTAAACTCTACCAAGCCCTAGTGATTTTTAGAATATGTATGAAACAACTGGCTGAGATGTTGGGAGAATGGAGTGCTAACATCTCTGCATCTTCCCTTGTTTTTTAATTTTATATGTTTAATTATATATGTTAGCCTATGTCTCTGCCCCACATGTGGGACAACCTTCCAAGGTCAGAAGACATAGGATCCCGTGGTGTTGACGTTAAGGGTGTGATTGAGCTGCTGTGGGTTCTGAGAACCCTGAGGTGCTCTTGTCTGGGAGCATGCTCTCCCCTATCGATGGAGATTCCTTAGGCTAGGAAAGCAGGGTGTTGGGGAAGGTCAGTCCGATCTCCATTCAGAAGCCTAGTGTAGTGGAAGGGCTCAGAATTTGCCCTGGTGCTGACTGCGCCTTTGTTCTTCCAGGAGGATGAAGGCGAGGATGACTAGCACAGAAGACCGATGGATCCAACCTTCTTTTTCATTTTCTTTTTATTTTTTAAATTTCCCCAGTCCCTGGGAGCGAGTTGCAGTCCTTTCCTCCCTGTCCCTCTGTGCTCAGCCGCCCTGTTTTTGAGGTCTCAACATCATGGTTCTCAACTAATTTGGGGGGAAAATATCTTGAGCAAAATACAACAGGAAAAGAATCTTCACGTTTCTGTTCTAAATTCATTTTTATCCTTGTCTCAAACTGTGGATTCAACACCACCACCATGCTCTGTGGGAAGAAAGAAAAGCCCTCCAGTTCCCTTGGCTCTGCTGGAGGCTGGAGGGTGCTAGGCCCCTGTGTAGTAGTGCATAGAATTCTAGCTTTTTCTTTTCTCTGTATATTGGGCTCAGAGATTACACTGTGTCTCTATGTGAATACAGACAGTTAGCATTTACCAACATGGATCTGTCTACTTTCTCTTGTTTAATAAAAAGGAAAAAAAAAGAAAAAGGGGGGGGATAGACAGTGAGCAAGGGTGGGATCGAGGTGTCGGGGGGGTATGTGGGCATCTGACAACATGGCTTCTCCTTTGGCATGTTTCATTGTGACGTTTAACAGACATCCTTGCCGTTTAAGGTGACACTTAAATAAAATAAAACTCTCCTGATGAAGACTTGAGCCCGCCACTCACGGGAGAACCAGCAGACGCTGTAGGGGTTTATTTGGAGTTGGCATTCTCTGTTGTAACTTTCATCTTTAGTTTTTTTCTTTCCTTTTTTTTCTCTTTTTTTTTTTTCTCTTTTTTTACTCTTTTTCGGTTTTCACTGGAAGGAAAAAGATGCTCATTTTAAATGTTGCCGTGTACAAGTTGCTTTGTTACAATAAAATCAATGTGTACACAAAGGACCTGATGCTTTTCTGTCAGAAGAGATGCTCCACAGACCTTCCAAGTTTGACCTGCATAATGACACCATGTCAAACTTTGTCTCCCTAACTTCGTATTTTTTATACGCACTTTGCAGGATGACCTCAGGGCTGTGCAGATTGAGTTAAAGGGATTTGAATCATGTCTTAACGTCTCCGTAACTGAGTGGGCACAGCTTGCTGCTGTGGACTCGTACCCTTGGTTTTTATCTCACATTTGGCATTTTTTTAAAAAAAAAAAAATAAGGGCCTTTAGTTACCTGGATCTCATGGCAGCACCTGCTCCCACTGTCACTGACCTGATACTCTAATGCCATCTACAAAGGACAACTGCTGGTGTGAACTGGCAGTGTGAACTGACCGAGAAGGTGGGCTGTCTGTCAGGGTGAGCAGTCGGTGAGGTGGGCTGTCACGGGTATGTAGCAGAAACTCTCAGACGTGACTCTGACCTGGGTGGATGAAGAGCTGTCTGCCCAGCGCCATTGTGCAGAGAACAATGTTTCGGGAAGCGACCTGATGCATAAGCTTTTTAATGCTGTAAAATAGAGCTAAAATGAAATGCCACTTTTTCAGAGATGATTAATGGACAGCCTGGTCAAATTCAAAGCTTTCTGATGTATAAAACTTTATAAATGGAACTACTCCATCAATAGGCAAAGTGTAACCAAAATCTGTCTAGATGGATAGTGTGTAATTTCTGCACAGGACTCTGTTTAGTAAATACATCACTGTATACGTCAGGAATCTTGCTCCAATAAAGGAACATAAAGATTTTTTTTTGGACTGGGGTCATTCTCCTTGTTTTGAAGTGGGGTGCCAGTGCTGCTGGTTTGGCGGTAATTATGGCCCAAATGGCATGCAGAAGGTTGAGTGATGCACGTCAGATTCATAAACGTTTGTTTGAATGTGATGTGGGGGTGGCGCTGACCTTGCACTAAGTGAATACTGACCCCAGGAGAGTTGAGTAGTTGAGTGTGTGTGAGAGAATAGCATTGCATCACTTAAGCTATGTCCCTAACCTCTGACCCCCTTAAGTTTTTGCTGGTATACCAGTTAGTTCCTTCTATTTTTACATGTGTGGGGTTTTCAGCGATATAAGATTCCTATCATTCTTTGGTATCTCCTTTATTTGAGGCATTTTATGCCCTTGTGCTCCATACCTATAATTCAGACAATCCTTGAGTTTTCACTTACCACACTTGAGTCTCCCAAGTATCTGGGGTTATAGGACTCAACATTGGGAAGGCTTTTTGAGGGGAAAGACCTACAGAGAGCTAGGATTCAGGAAGAAGGTGAAGGGCTATGTGAGAACTTTTGTGTAATTATTTGTATGAATATTTTGCTTGCTTCCATATCTGCACAAAGAATTTTCTGGGAGGCCAGAAAAGGGAGTTGGTTGGGATTCCGTGGGCCAAATATTGTCACTGTTTCACGAAAAGAATTGAAGACTGGGAGACGTGAGCAAGCCAAACGTGGGCTGCTTTAAAAGGGTTTATGAGACCTCAGGACTAGCATTAACAGGCCATACTGCTTAGCTGCTGGGCCGTTAGACTGGGTTTGAGAAGTTACGGTTTCGTTGTTTTAAACATGCCTTTAATCAGCGTTCTAGAGACAAGTGGGCAAGCGTAGTGAGAAGATCGCTATTGAACCTGCAATTGCCTGAGCCGCTTCCCATCTCAGACCTGCAACAGCATCTCTATAGAGCATAACCTTGGTCAGGCATGCTGGGGGCAGAGAGATGCGGAGGCTCTGCTGAGTTCAAGGACATCCCTTTGGGGTCTTTTTCGGTGGGAGGCAGGCTGATCTGCGTTTGAGACCAATCTGGTCTACAGAGTTCCAGGACTGCCAAAGCTACAAAAAGTATAGTCTGGATATGAAGGGTTTAAGTCTTGGGGGATGTTAGAGGTTAACATTTGACTCACAGAAGACCTGGGTTTATTTCTCGGCACCCACATAATGGCCAACAACCCTCAGTGACTCCAGTTCTGAAGCATCGTCACATTTCTGGCCTCTGCATATACATATGGCACGGACATGGAAGCACTGATGGGACAAAAACACATAACAACGCTGGAGAGATGGCTCAGTGATTAAAGTCACTGACTTTTCTGTCCTGAGTTCAATTCCCAGCAACCACATGGTAGCTCACGCCCATCTGTAATGGGATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAATGTACTCAGACAAGACAAATAAATCTTGGAAAGGAAAAGTTGCACTGTGTGTGTCAGTTTACTTTGGGTATGATGTGTGTTTCTGAGTGGATGCCATGCAAGTGGGTGCCCTGGGGTTGGAGTCGGGTTATTTGGGAACCACCTAGTGGAGGTGGATCCAAACATTGAGCCTCTGGATGCAGATGCTTTTTCTGAGTGCTGGGATTAAAGGCACTGTCCTCCCCATCAGGTCTAATGGGTTGTAGTTGTATGATTAGAGCAATTACAGGATGTTTCCCAGCCCTAGCCATATCTACTGATTTCCCAGAGGCCTAGAATAGCTACACCAGTGGGGTACAGGAAGATGTACCCTGTGTGGAGCCTGAGGCACCCTCAGGTTGTCCAGTCTTAAAGTATCTTAGGTGTGACCGGTGGTTCTGAAGTAGCATTCTATAAAAGACGGGGTTTTCATCTGTGGGGCAGGGTTTGTCTACAATGTAGAACCCCAGCATTTGACCCCCAGCACCAGAAGGCAGAGCAAGCACATACAGAATCTTTTAGAGGTCTTGGAGATCTAGTCATTGCCTTGGGAGTTAAGAGTTGGGGGCTGTGATCAATCACGTGTGCGGGAACTTGGTTTGTGTATCCTTGGCTGCCTGGGACTCTATACTAGGCTATCCCTTGAGTTCTGCCTCTCAGATGCTGGAGTTGTAGGCATGTGCCTTCCGTTCCTGGCTTCCCTTTTTTCCTGTTCTATGCATCTCTGATTAATCTTGAACTACCGTTAGCATCAGCCAGTGCACTTTCACTGCATGGAGGTTGCGGGTGGGGTCCCTATCTGATTCCAGGGGCTAAAGTACTGGCAGCAAAATCCCTTTACACACAGCCGCTGTCCAAAGGAGAGCTCTCAGACGGTTTAGCTTCTAGGAGAGCAGTAGTACCTCCTGTTAAGTGAGAGGTTTGTGGGAGACAGAGGCTCACTCAAGGCCCATCTGAGAAGGTTGGACGGCGGTGGAGGTGGTGCCCATCTTTAATCCCAGCACTTGGGAAGCAGAGGTAGATGAGTTCTAGGCCAACCTGGTCTACAGAGCCATTCCAGGATAGCCAGGGCTACACAGAGAACTCATGTCTCAGAAATGGGAGGAAAGATGCATTTGAATGGTGGAATTACAGCCGTACACCACTGGGCCCTCTTGAAATATCTTTAACCTGTGAACTGTAACACTGGCAACCCAAAGGGAGAGGTTTACTAGTGTGATTCATGGATTTTATAAGCTGTGGTACCTTTTCTTGTCGCCAGAGGTTCTTTTCCTTCTGAGTGGAAGGTGAAGCCATGAATGGTGACACATTTAATCCCAGAACGGTATATTAGTCCTTGACTCACATGTATAATGTAGCACAGAAAGATCGAGAGAGCTCAATAGAGTTCATGGAGAGCCTCAATTCCTGAAGCCAATCTGTGTTGCAGGTGATTCTGTCCCAAAGTAATGAAGTCGAGGCTTTAGAGATCCATCAGAGATGTAAAACACTGCGCCTGCAGTGGATTTGATTCCTAGTACCTATATGGACCTGATGTCTTCTGATCTCCAAAGATACCAGGCATTCACATGGTGCGCGAAAGCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCAGACAAAACATTCCTACAGGCACATAAAGAAATCCTAGGGACTGGAGAGATAGCTCAGTGGTTAAGAGCTCCGACTGCTCTTGCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGGATCCGAAACCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTCTACTCACTCTACAGTGTACTCACATATGTAAAATAAATAAAAACCTTTAAAAAATAAATCCTAAAATTTTACTAATGAAAGTAGCCCCTACCTGGGTGTTGGGGCACACACTTAATCCCAGCACTTGAGAGGCAGAGGGAGGTGAATGGATAGCTGAGTTTGAAGCCAGCAAAAACTACATAGTGAGTCCCTTTCTCGAAAAAAATGTAGCCCCAGCAGGCTGCAAACTCTTCATCCATCTCTTACTATAGCCTTTCTGGTACTAGGATTGTAACCTATTATAGACTGGTTCCAGAGGTAGGTTTCAAACTACTGGTATTCTTAGGATGCCAGAAAGGTTTAGAGCCAGGATCCCCCCTCAGACCTTTTTTTTTTTTTTTTTCCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTGCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCCCCACCCCCAGACCTTTTGAAGACGTCACGTTTTTTTTTTTTGTTTTGTTTTTGTTTTTGTTTTGTTGTTGTTGTTTGGAGACTTGATTTCTCTGTGTAGCACTTCTTGTTGTTTGGAACTTGGTCTGTAGATCAGGCTGGCCTTGAACTCACAGAGGATCTGACAGCCTCTGCTCCCCATGCGCTGGGATTGGAGGTGTGGGTGTGGTGTGCTGGTGATAATGCGAACCATAGTTCTGTCTGGCCCTTTCCACAGGCACACAAGAGTGTTCATGACCACGCCTTGAGGTCAAGCGCCTCCCCCCCAACGCCTATGCTCTGGGCAAATCCTACCCACCTGAGAAGTCCCAGGCCCCTAAAAACCAACAGTGGATTCTGAGAACTGGTCTAATCCTGGAGCTCGCAGCATTTTACTGAACTCCCTCCTCGGCCCCTACGGACATCCTTATGGTAAAATCACAACCTTGACTCCAGCTGAGTCAGAAAAAGCGTTTCACACGAGTCTGAGTTGGTTCGTATCTTACTTGGATCTGACCATAATTTGGGTCAAGGCTTACTCCGTGACCAAGCCAGGCCCCAGCGCACGCTGCGGGCCATGCGGGAGCAGAGATGGCCCTCGGCTTTCCTATCTCTAGGAAGAACAGTTGCGGTGCAAAGAGTGAGCGTGCACCGCGGGAAAGGAGCCTCGGATCCGCGGAGCTGAACTCCGGTGTGGGGTCCGGGACGCTGCTCCCGCGAGGCCGGGAGGGGGCGCTGCTCCCCAGCACCTGCCGGGCGCGCGAGTCTCCGGAGGGGGCGCCCGTCCGCGTGTCCCGCGCCACTTCCCGGGAAGTTTCAAGTTTGAAAGTCAGGCGCTGAGGCCCGGGCTTCCGGAACCATAGTGGAGGAGAGGACTGGCGGGCAAGGCGCCATGGAGTCGGAGGGGGCGGCGCGCCAGGTGAACCAAGCGCGCGCAGCGGCCGCGTTTGCAGCTCTGAGCACCGGGTGCTCCGATCTTCACCCTACTCTGGCCTCTGCCTGAGCCCTGGGTTAAGACGCTTTGGTCCCCAGGTCCTCGAAGTGACGGAGATCCAGCCCGGCAGCATGCCTGTTACCGTGGAATGTGCCACCGGGGGTTGGGGGAAGAGGGCTCAAGTTCCTTAAAATTCGGTCTTCTAGAGACTTACAGGCGGGTGGAAATTTGCCAGGAGCTCAAAGGTTGGGATATACGGCCCTCCAAGAGAACTCGGGGGTGGGGGGTGGGGGAACGGGACGGACAAGACTGTGCGCGCAGTGGGCGTTGTCCCCAACACACCACACCCACAGGCTAGAACAAGTTGGCCACTAGAGGCACTTTTGGCTCAGCTTTGTGCAGGAAACTCTTGGCTCCAAAGAGGGGTCCACAATGTGGAGAGGTTCTGGTTAGATGTGTCACTTAAGTGGGGGAGAGAGGTACTGTTCTACGCCATGACAGTTAGAGGTGAGGGTGAGACGTTTATGTAGAAGAGAACATCAAGTCAGGACACGAGGTGAGGGTAAAGTGCGGTAGATTGGAGCACCTCAGTGGTTTAGGCCGCCTGTGAGACTGGATCTCACCCCCTCCCAGTACCCTTCCTCCGGAGATCCCTCTTGGCCTGTCTAGCTTATACACATTTTCCGATTTCCTGTGAGCCTCCGCCCTGCAGCAGCGGCAGCGAGGTGACTCAGGACCCCGGTGGCCAGCAGGCCCCCAGCTCTGTGAGAGCTTTGTTTGCTCTGGCCTTCTGGCTTGGGGCGGCCAAAGGATTTCCTGAGCCTCGCCCTTGCCCTCTGACAGCTAAGGCAGGACCAGCCAACCTAGCTGAGGCCTGGGGCTGGGGGATTGGGGGGCCCCTAAACTGAGTAGCCATTCTTCTTTCATGGGTCTTAGGAGATGGAACACAGAAAGGTAAGAGGGATAAAATAGGGTGGCTTCCAGGATCCTAGGGATGGAAAAGGGGGTCATCGGGAGTTGCCCTGGGCTGAGTCAGCCTCTGAGAGAGAGGTTTCTTCTCCATGCCTCTAATCTGGTGAACAGTTGTTGGGGTCTCTTACCTCCCTCCAGAGTTGACTTGCCAGACCTTGTTAGTTCTTGCTTGGCACCTCTGCTACAACACCTGTCTGTCACGTCATCTAAGGCAGAAGATAATAAGTTTTGGTGTTTTGGGGCACTGGCTGCCTTCTGCATGTGACCTAGAGTGAATTCTTTGTCTGTATTACTTCCCAGGTTCCACTTGGTTCTCAGACCTAGGGAGAGCCGTGTGGCAGGCTGGGAGAAAATGGGGTCACACGGTCCTTCGATCCAGGGTCACTCCTGTGTATTGCCTGTATGAGCAGGCCGTCTAACCCCTCTTTGTTCTTTGCTCTTGTATGAAATGAGAACCAGAGCTAAGCATGCGATCTGTGGCATCTCTGTGCTACCGAGGAGTAGGGAATTCAGTGTGTGGTTAGAGCATTAGAACTCAGGACCCAGAAGGCAGCAGGAGGACCTGGTCTTTTTTCTCTCTCCCTTCTTTGAAAGGGAGACAGGAGCTAGACACAGACAAGGCAGAGTTCTAAGGCACCCAGGAGCTCTGCCTACTGTGTCTGTGCAGCTGGCTGTGCTAAGACTTCCCTGCCCTTTGCAGCCTAGGACTGGCCAGAGAGCCCCCGAGGATGAGAAAGAGATGATCCGTCGAGCTATCCAGAAGGAGTTGAAGATCAAGGAGGGCATGGAGAACATGCGTCGTGTGGCCACAGACCGACGCCACCTGGGCCATGTGCAGCAGCTGCTCCGGGCCTCCAACCGCCGCCTGGAGCAGCTGCACGGCGAGCTTCGGGAGCTGCATGCCCAAGTTTTGCTGCCAGCCCCAGCCCACGGTGAGTGAGGAGTCTGAACAGACCCCAGGGACCAGGAGGCACAGGATCCTGGCCTTGGCTCTGACCACTGGATCAGAGCCCCTGACCGCCCTGTATCTTCTATGTTGCCTATATGGACATGAAGAAAACACTGCTTTCACAGAGGTCTGAACTCTAAGGTGGGATCACGCACCCCCTACCTTCTGTTGCAGAGCCAATGACCTCAGGACCCCAGCCACGGGCAGAGCAGTCGAGGGCTCGGCTCCTGGAGGCCTTACATAGGCAGCTGGAGGTAGAGCTGAAGGTGAAACAGGGGGCTGAGAACATGATTCACACGTGTGCCAGCGGCACCCCCAAGGTAAGTGCTGGGCCTGGCTTCTCATCTCCCTGATGGGAGAGACTTAGCTCTCAGGTCTATGGAGTACAAAGCCAGGCCCCGTGCCAACAGGGAGACGCTACTCAGCCCAAACTCTTCAGCCAATGCTAGAAGCACAGTTGGGCGGGTGAGGCAAGGCTCTGGTCCACTCTGTCAGCTATGCTCAACAGAAGACAAACAGAAGGTCCAGCCAGCTGCCGGCCCAGATCCCAGCATCCTCTGCGCTCCATCTGACAGAACGCCTTGCTCACCCCGCCATTTTCCACCCCTATTACATAGTTCAACAAGGGAGGCTTGCCTGTAGTATCTTCCTTGTAGGAGTTTGAACCTTGGTCTCTAACAGGGACTCAGCCCCACCCAGTCCCTGGTGGTCTGCCATAACCCCCACCTGATGGGGCGAGTGTCACATCCCCTAG
Seq C2 exon
GAGAGGAAGCTCCTGGCGGCTGCCCAGCAGATGTTAAAGGACAGTCAGCTGAAGGTGGCCCTACTCCGAATGAAGATAAGCGGTCTGGAGGCCAGTGGGTCTCCAGAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025892:ENSRNOT00000050528:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.337 A=NA C2=0.518
Domain overlap (PFAM):
C1:
PF0095613=NAP=FE(23.4=100),PF0218511=HR1=PU(12.8=15.8)
A:
NA
C2:
PF0095613=NAP=PD(13.3=55.3),PF0218511=HR1=FE(78.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]