DreINT0115258 @ danRer10
Intron Retention
Gene
ENSDARG00000062707 | plat
Description
plasminogen activator, tissue [Source:ZFIN;Acc:ZDB-GENE-081104-181]
Coordinates
chr8:2204070-2206897:-
Coord C1 exon
chr8:2206757-2206897
Coord A exon
chr8:2204219-2206756
Coord C2 exon
chr8:2204070-2204218
Length
2538 bp
Sequences
Splice sites
5' ss Seq
AGTGTAAGA
5' ss Score
4.57
3' ss Seq
GACCTGCTCCTCTCTCTCAGTTT
3' ss Score
9.11
Exon sequences
Seq C1 exon
CTCTGCTCAAGCTGAAGAGTGAGTCTGGGATCTGCGCGGTTCACTCTCCTGAAGTTCTGCCCGCATGTTTACCAGAACCTAACCTGGTTTTACCAGACTGGACAGAGTGTGAGATCTCTGGTTATGGAAAAGAGGAAGAGT
Seq A exon
GTAAGATTTACCATCTAAAATTCTTTCAGTCAAGATACAGTTGATTGAGAACCCACACTGACCTGAATTTCTAATAACTGATTTCTTTTTGCCATGATGACAGCCCATACATTTGAAGCCAGAATTATTCTCCCCCTTTGAATTCCTTTTTCTCTTTTAAATATTTTCCAAATGATGTTTAACAGAGCAAGGAAATTTTCACAGTATGTCTGATAATATTTTTTCTTCTGGGGAAAGTATTATTTGTTTTATTTCAGCTAGAATAAAAGCAGTTTTCAATTTTTTAAACACCATTTTAAGGACAAAATTATTAGCCCCTTTAAGCTATATTTTTTCAGTAGTCTACAGAACAAACCATTGTTATAAAATAACTTGCCTAATTACCCTAACCTGCCTAAACAACCTAGTTAAGCCTTTAAATGTCACTTTAAGCTGTATAGAAGTGTCTTGAAAAATATCAAGTCAAATATTATTTACTGTCATCATGGCAAAGAGATAATAAATCAGTTATTAGAAATGAGTTATTAAACTATTATGCTTAGAAATGTGCTGAAAACATCTCTCCGTTAAACAGAAATTGGGGGGGGAAATTAACGGGGGGGCCTAATAATTCAGGGGGGCTAATAATTCTGATTTCAACTGTTATATTCAAGATATTTTTCAAGACACTAGTATTTAGCTTAAAGTGACATTTAAAGGCTTAACTAGGTTAATTAGACAAGTTAGAGTAATTAGTCATTGGTTTTTAAGGCTTTGGACAACTTTGTTTGTTCTGTAGCGAATTGAAAAAGAAAACGAAAAATTCTTATAGGGGCAGTTCACTCTAAAATGAAAATTTACTCGCTATTTACTCTCCCTCAAGTGATTTCAAACCTTTTTGAGTTTCTTTCTGTTGTTGAACACTAAAGAAGATATTTTGAAGATTGCTGTCTCTTTGTCAGATCTATAAGAAATAAGATTTTTCCAGAAGACAAATATAATAGGAAATACTGTGAAAATCCCATTGATGTGTAAAAATGCGTAAAGCGCTTTGAGTGTCCAGAAAATCGCTATATAAATGTAAGGAATTATTATTATTATTAATATTAATAATAATGTCTGAGCTCCAGAGAGAGGAGAACCTTACAGAAGGACAACCATCTGTGCAGCAATCCACCAATCAGGCCTGTATCGTAGAGTGACCAGACGGAAGACACTCCCTGCCTGGAATTTCCCAAAAGGCATCTGAAGGACTCTCAGACCATCCGAAACTAAATTATCTGCTCTGATGAGACAAAAATTCAACTCTTTGGAGTGAACGCCAGGCGTTACATTTGGAGAAAAGCAGGCAGCGCTCATCACCAGGCTAACACCATTCCTACAGTGAAGCATGGTGGTGGCAGCATCATGTTGTGGGGATGTGTGTCAGCAGCAGGAACTGGAAGACTAGTCAAGATAGAGGGAAAGATGAATGCAGCAATGTACAGAGACATCCTGAATGAAAACCTGCTTCATAGTGCTCTTTACCTCAGACTGAGGCGATGGTTCATCTTCCAGCAGGGCAATGACCCAAACACACCGCCAAAATATCAATGGAGCGGCTTTACAACATCTCAGTAAATGTTCTTGAGTGGCCCAGCCAGAGCCCAGACCTAAATCCTATTGAACATCTCTGGAGAGATCTGAAAATGGCTGTACACCGTCGCTTCCCATCCAACCTGATAGAGCTTGCAACAATTTCAACAACTCTTTTTTCACATTGTCATTATGGGGGATTGTGTGTATCACAGCCATATTACCCTGAAACCCAAGAGCGGTTACTCACTGAAGCTAAGCAGGGCTGAGCCTGGTCAGTACCTGGATGGGAGACCACTAGGGAACACTAGGTTGCTGTTTGAAGTGGTGTTAGTGAGGCCAGCAGGGGGCGCTCAACCTGTGGTCTATGTGAGTCCTAATGCCCCAGTAAAAGTGAAGGGGACACTACACTGTCAGTGGGCGCCGTCTTTCAACCGAGGTCCTGACTTAAAAATCCCATGGCACTTCTCGTGAAAGAGTAGGGGTGTAACCCCGGTGTCCTGGCCAAAGTCCCTCTATCGGCCCATACGATCATGGCCTCCAAATCATCCCCTTCCACCGAATTGGCTCTATCACTGTCTCTCCACTCCACCAATAGCTGGTGTGTGGTGAGCGCACAGCGCCGTTGTCCTGTGGCTGCCGTCGCATCATCCAGGTGGATGCTGCACACTGGTGGTGGTGTGGAGAGACCCCCCTCATGATTGTGAAGCGCTTTGGGTGTATGGCCATACACAATAAATGCGCTATATAAATACACATTACATTACTTACTTACTAGAATGTTGAGGAAGTAAATGAATTTAATCCATTTTGGAATAAGGCTGTAACAAACAAATGTGGAAAGAGTAAATACTGTACTGTAAATAGTTTGAATGATTTATAGATACAGCTATAGAGATATATTAAACTCCAACCAGGCCTAGAATGTGATGTTATTGCAGGATGATCTGCAGATTGAGTGACTGACCTGCTCCTCTCTCTCAG
Seq C2 exon
TTTCTCCGTTTTACTCAGAGAGGATCAAGCGTGGTCTGGTGCGTCTGTGGCCGCAGGATCAGTGTGTCCCTGAAAAACTGTCTGGTCGACTGGTCACCTCAAACATGCTGTGCGCTGGAGACACCCGAGGGCTGGACGATGCCTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062707:ENSDART00000147275:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(19.6=100)
A:
NA
C2:
PF0008921=Trypsin=FE(20.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]