RnoINT0112599 @ rn6
Intron Retention
Gene
ENSRNOG00000019018 | Plat
Description
plasminogen activator, tissue type [Source:RGD Symbol;Acc:3342]
Coordinates
chr16:74101076-74103938:-
Coord C1 exon
chr16:74103798-74103938
Coord A exon
chr16:74101240-74103797
Coord C2 exon
chr16:74101076-74101239
Length
2558 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGT
5' ss Score
8.31
3' ss Seq
GCCTAATTGTTCTCTTTCAGCCT
3' ss Score
8.55
Exon sequences
Seq C1 exon
CATTACTGCAGCTGAGGTCAGATTCCAGTCAGTGTGCCCAGGAGAGCAGTTCTGTCGGCACTGCCTGCCTCCCTGACCCCGACGTACAGCTTCCTGACTGGACAGAGTGTGAGCTTTCTGGCTACGGCAAGCATGAGGCAT
Seq A exon
GTAAGTGGCAGGAAGTCTTGTTCCATTCTTGTCTGTCATGAGGTAGTCACACCGATGGGGGGCGGGGGGGATGTGATCATAAAATGTCCTGGTCCTAATTCTGGCATTGCCACACAAAAATGCAGGCGAGGACTCTGCCTGTCGTGCGATGAGAAGCTACCACCCCTTGCATCACAGGGACACTGTGCAGGGCACAGTAAGTGGGGACAGGGAGATGTTCTGAGGAGCTTTACCATCCAGTGGAGGGGGGAGGGTAATGGGTGTGTCTGTTCTTAGACGATGGCGTTGCACAGGTTGAGTTCAAATCCCAGACTTGCATCTGGCTTAGCTGTGGGGCCCTGGATATTTCATTCAGCTTTCTAACAATGTCAACAAATATGAGTGAAATTAACCTAAAGAAAGGAAAGCTTTGTTTGTGCTCATGGTTTTGGAAGTTTCAGATTACGGTCGGTTGGCCCAGTCTGTTGGCCTGTGGCAAAAACAGCACATCATAGGAGGACAGCACATTATAGGACAGCACACCACAGGGAGGATGATACATTATAGGAGGGAGGACGGCACATCATAGGAGGGAAGATGGCACATCACAGGAGAGAGGACAGCACATCATAGGAGGGAGGACAGCACATCACAGGGAGGATTATACTTCATAGGAGGAAGGACAGCACATCACAGGAGGGAGGACAGCGCATCTCAGGAGGGAGGACAGCACATCACAGGAGGAGCCCACAGCAATGGAGTAGTTCACCTTGTAGGAACTCACAAGTGAAAGAAGAACCTGTGCTGTTGTAAAAATATTTTTAAAAAAAATTTTAAAAGTAGGGTCGTCTTTTATCCCTGCTAGGTCCAACACCGTGGTGCCCAAGATATCTGCTGGATATCTTAATTCTCAGTCAGCAAAGTGTCTCACCTGCTCTGCTCCATCCCCTACCACACTGCCGAAGGCCTCTCTCTGAGCCTGGCAGCAATCTCTCTACCTATCTAGTTCCCAAGGCAGGTTTCCATGCCAGAAACACACCCCAACTCCAAGGCAGCCCAGACTAGCCGCCCCACACTCCATTACACTTAAATCTACACCTGAAAGACCACACAACACAATAACCTTTGATCCAATTGATAAGATATAATTGCCCACCTAAACATACAAAGCCCAGTACCATTCATCCCTTAAGAACATTCATAACAACCGTAAATACACAGAGCAGAATCTTTTTTTTTTTTTTATTAACTTGAGTATTTCTTATATACATTTCGAGTGTTATTCCCTTTCCCGGTTTCCAGGCAAACATCCCCCTCCCCCCTCCCCTTCCTTATGGGTGTTCCCCTCCCAACCCTCCCCCCATTGCCGCCCTCCCCCCAACAGTCTAGTTCACTGGGGGTTCAGTCTTAGCAGGACCCAGGGCTTCCCCTTCCACTGGTGCTCTTACTAGGATATTCATTGCTACCTATGAGGTCAGAGTCCAGGGTCAGTCCATGTATAGTCTTTAGGTAGTGGCTTAGTCCCTGGAAACACAGAGCAGAATCTTAACGTCACCTGCCATGGCTTCTCGCCCTCTCCCTCCTGTCTCTTCTCCTTTCCGTTCCAGTCTCCTCCTCTTCCTTCAAACCTCTCTCCCGCCCATCTTCCTTCTCCTCCAATGACAGGCCTCCTTCTATCTTGACCCTGCCCCTCACCTGTATTTTACAAATTCAATGGGGAGAAGATTCTGATGAAGTCACCTGAGTCCTGAGTAGTGACTGGGCAGCTGTCCTTGGGGCAGTGGAATTAGCATCAAAAAAGATAACTCCAGGGCAAACCACCACAAACCTGGGTCTCAACATCTCTTCCAAAGGCTTAACTTCCTTCTCCCAGAGCCACTTCCTAAGGCTCTGCCATCTCCAAAGAGCACCAAGGTCTAGGACCAAGCCTTCAACACAGTGGCCTTTGAAGGAGTGACGATCCCGACCAGATGTGTATTTTGTATTATTTTATGAAGGTGGGGGTTGTGGGGGATCTCATGATGTTTCCTAGAGTGGTTTCAAACTTGCAATCCTATCTCAGCCTCCCCAAGATTACAGGTTTGGACCATTAGACTGGGCTGAAGTACTTTATTTTCCTAAGCCTCAGTTTTCTCACTGCCAGTGTAGAAACAGAACCAGCTCCCTGGTTAAACTATAAGGAGTAAATACCACAGTGCACAGCTGAATGGATGGTCCTCACTTGGGGAGATTTCACTACCTAGGCCACGTTTGGCAGTGTCTGGAGTCATTGTGGCCACAGTGTCACATGTGTGGCTGAAGGCTGATCCTGACCTTTGCTTGGCAGAGAGAGGCTACCAAGCACCTGTGGTACACGGGGCATTCCTCATGACCTTTAGCTATCTAGTAAACCGTTGGTGGCATTACTGACCAGCGTGATCTCACCCTAGAGAACTGTTGGGAGGTTCCAACAGTAAAATAGGGTAACCTCACAGGGGACAGCCTGATTTGTGTCAGCTGTTACCGGGACATTTGGCTTTCTCCTTCTAAAATGCTTGAAAACAGCACTGAGACCCTAAGGCCTAATTGTTCTCTTTCAG
Seq C2 exon
CCTCTCCTTTCTTCTCTGACCGGCTGAAGGAGGCTCACGTCAGACTGTATCCGTCCAGCCGCTGTACCTCACAGCATCTGTTTAACAAAACCATCACGAGCAACATGCTGTGTGCAGGAGACACCCGAACTGGGGGCAACCAAGACGTCCATGACGCGTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019018:ENSRNOT00000025763:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.127
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(19.2=100)
A:
NA
C2:
PF0008921=Trypsin=FE(22.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]