DreINT0116603 @ danRer10
Intron Retention
Gene
ENSDARG00000102607 | pmpca
Description
peptidase (mitochondrial processing) alpha [Source:ZFIN;Acc:ZDB-GENE-030131-5809]
Coordinates
chr5:64358662-64361521:+
Coord C1 exon
chr5:64358662-64358762
Coord A exon
chr5:64358763-64361257
Coord C2 exon
chr5:64361258-64361521
Length
2495 bp
Sequences
Splice sites
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
3' ss Seq
ACAGTTTCTTCAATGTTTAGGCC
3' ss Score
6.94
Exon sequences
Seq C1 exon
ATGAGGAGATTGAGATGGCCAGAATGGCTGTTCGGTTTGAGTTGGAGGATCTGAACATGAGGCCTGACCCGGAGCCTTTACTGACAGAAATGATTCATGCT
Seq A exon
GTAAGTTAATTTTTTTTGTTTAACTAAAATGTACAGTGGATGTCTTCAATTTTGATTAGTTTTCATTCATTGTAATAAAACAAATTGGAAGTATTACTCTTCTTTATAATACACAGGTTTTAACGCATTAATTGCCTTCAGAGGGCTCATTTATAGTGCTCGGCATAATTGAGTACGCCCTATTTTGAAAGAATATTTTTATCCATTTCTCAGTGAATATAGGCAATGCGTTTTGGTGCATTTAAACAAAACAGATTTATTAAACTGATATATTTATTAAAATAATATTTTAGTAACCAAACATATTTAGAAATTGAGAGAGAATACAATTAAATTCAACTAAATTTTTACATTTTTGTTTGCTTCTCATTTTTTTATTTTTTATTTTTTTTAAAAATTTGTATTTAATATTTTTTTTATAACATATAAATTTGGGTGTACTAATTTTTGGACCGTTGCCGTAAGTTATTTTGTTAGATGAGCTCCTGATCTGGCTTCAGTACTGACTAATCTAATGTGTATGCACAAATATAATATTGTATAGCTTCCTATTAAAAGCATAGCTTTGTGAGGGGTGTACTCCTTATATGCTGAGCACTGTAAGCAATGGAAATTAAAATCTGAAAAAAATCAACCATTATAAAATCATTAACATGCATGCTAGAAAATAGGTGCTACATGTTAGGAGCTCGAGCGAGGCAGTGGCGCAGTAGGTAGTGCTGTCGCCTCACAGCAAGAAGGTCGCTGGTTTGAACCTCGGCTCAGTTGGCGTTTCTGTGTGGAGTTTGCATGTTCTCCCTGCCTTCGCGTGGGTTTCCTCCGGGTGCTCCGGTTTCCCACACAGTCCAAAGACATGAGGTACAGGTGAATTGGATAGGTTAAATTGTCCGTAGTGTCCTGCTCTGCCCCCTCATATTGGGCCGGCTGACTCGCATGCTTTTCCGCAAACACAGAAAAATGTAATTCAGCGCGTAACGAGGCTGAGCATTAAAACGACACGAACCGAAACCAAAACTTTTAAAAGTGAGATTTTCTTCCTTTCTTTTGTCCCTTCTTTCTTGAGATGCTTTGCCGCTTTCAGCAATGAATTGAATGATTTATTATATTATTTTGTTTGTTTTGTAGCAGAACTATTATTTATTAAATTGACATGCATATAAAAACAATAGTACAAAATAAATATTTCTTACTACAATGCTTCATTTATGTTTGATGCAAACCATAAACTTATTTTTCATAAAGTAGAAGTAGGACTTTATCTAGCAGATAACTTACGTTAAAGCACATTCAAGGCAGCATGATGAGAAGTATAATTCATTATTAGTATTATTGTCATCATGATCATCATTGTCATCATTGATATTTTATAGTTATTCAACATTCATTTTGGAATTATTGCACAAATATTAAGTCATCACAGTATTAGTTAGATAGTTGTTCTGGGTTTTGTTAGTCCCAATTGATGTTGTTTTCAAATACAATAAATCCCTTAATATACAACTTGTCAAATATATCATTCATTTTTGGTGGGTGCTCCTAATTTTTTTTTGGTGCTCCTTATATTATATTATTTTAATATTTCAGGTTGGGAGCACCGGTGCTACCAAGTAAGAAAGTTTATTTCGAGCCCTGTAATTATTTATTAATTATTAATTGATGGGTAAATGGGGTAAACTTGGACAGAATAACAGATTTTGCATTATTTTCTTTTCAGTTGTTTTTTTTTATTTCTTTACATTTCTTTGGGTTTTGGCATGATTTCTAGCTTTTGAGGATCTTTTGGTCTACTTCACTTTGTCAGGCAGGTCCTATTGTATGTATGTATGGTATGTGTGTGTGTGCGTGCGTGCGTGCGTGTGTGTGTATGTGTATATATATATATATATGTATATATGTATGTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATACATACATACATACATACATACATATATATATAATGTGTATATATAACATAATATAATAATATAGAACTGGTTGTCTGTAGAGCAGTGATTACCAAACTTTTTCTTGGAGGGCCGGTGTCCTGGGAACACACGGGAACAAGCTAATCAAGGTCTTACTAGGTATACTTAAAACACCCAGGCAGGTGTGTTGAGGGAAGTTGGAGCTAAACCCTTTAGAGCACCGGACCTCCAGGAATGAGATTGGTGACCCCTGCTGTAGAGTAATATAAACTATTTAAAAATGTATGTTTGACCTTGTATATATCCTCGTTATTATGAATGATTTTGTCTGAATTGTTGAAATACTTTACTAGTGTACATAAACTTGCATTTGTATTTAATTACAGAACAATTTAACTATAAATAAATGTTTTTTTACAAGTTAACCAATTTAAAAATACAAAACCATAACCTTGGGATTAGTGAACACTGCGTAGAGAGCCTGTCGAAGTCTTCATTTCACAGTTTCTTCAATGTTTAG
Seq C2 exon
GCCGCATACAGGGGCAACACCGTAGGCCTGCCGCGCTTCAGCCCTGCTGACAATGTGGAGAAGATCGACAAGAAGCTGCTTCACAAGTACCTGCAGAGCTATTACTGCCCGGAGAGAATGGTGCTGGCCGGCGTCGGCATCGAACACGAGCAGCTGGTTCAGTGCGCCAGAAAATATCTCCTGAATGTTCAGCCAGTGTGGGGCGAGAGCAAGCCTGCCAACGTCGACCGCTCTGTGGCACAATATACGGGTGGCATCGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102607:ENSDART00000164278:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0067515=Peptidase_M16=FE(21.9=100)
A:
NA
C2:
PF0067515=Peptidase_M16=PD(9.9=17.0),PF0519316=Peptidase_M16_C=PU(33.5=76.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]