MmuINT0122942 @ mm10
Intron Retention
Gene
ENSMUSG00000026926 | Pmpca
Description
peptidase (mitochondrial processing) alpha [Source:MGI Symbol;Acc:MGI:1918568]
Coordinates
chr2:26391866-26392675:+
Coord C1 exon
chr2:26391866-26391966
Coord A exon
chr2:26391967-26392411
Coord C2 exon
chr2:26392412-26392675
Length
445 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAAA
5' ss Score
0.12
3' ss Seq
TCTCCTCCTGCCTGCTGCAGGCT
3' ss Score
9.63
Exon sequences
Seq C1 exon
ATGAAGAAATTGAGATGACGAGGATGGCTGTGCAGTTTGAACTAGAGGACCTGAACATGAGACCTGACCCAGAGCCACTGCTCACCGAGATGATTCATGAA
Seq A exon
GTAAAACCTCTCCCTGCTGTTGGCCTTGCGGGTGGTTAGGGTCACAGAACAGGCTTAGCTTCCTGGGGTTTTTTGTTTTTGTTTTGTTTTTGTGATAGTTGCTTTTGGTTCAGATTTGGTGTTGAATTCATAACCTCCCTGCCTTGGCTTCCTGTGTGCTAAGATTGTGGGCACATGAGCGAGCTCTCATAGCTGTATTCTTCTGAGCCTGCCATGTCTGCAGTGGTAGCTGTTCCCACTTAGGGTACCACAGTCATTACCATTCCATCTGTGTGGCTCTTCTTGTGTTTTTCAAATCTTCTCTTTGGGGTAAACTTGCTGCTTCCAGACACGGAGCCAAACTGGAGATACTGCCCAGTCTTTTTGTGGCAGATGTGGTCATAGGCCGAGGCGGGGACCTGATTGTTTTTCTCCCTTGGGTTTGTTCTCCTCCTGCCTGCTGCAG
Seq C2 exon
GCTGCTTTTAGGGAGAACACAGTGGGTCTGCACCGGTTCTGCCCTGTAGAGAACATAGCGAAGATCGATCGGGAAGTGCTGCACTCCTACCTAAAGAACTACTACACCCCTGACCGCATGGTGCTTGCTGGGGTGGGCGTGGAGCATGAGCACCTAGTAGAATGTGCCAGAAAGTACCTCGTGGGAGCCGAGCCTGCCTGGGGAGCCCCTGGAACGGTGGACGTTGACAGATCAGTGGCACAGTACACTGGGGGGATCATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026926:ENSMUST00000076431:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.059 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0067515=Peptidase_M16=FE(21.9=100)
A:
NA
C2:
PF0067515=Peptidase_M16=PD(9.9=17.0),PF0519316=Peptidase_M16_C=PU(33.5=76.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGATGACGAGGATGGCTGT
R:
CCCAGTGTACTGTGCCACTGA
Band lengths:
343-788
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types