DreINT0118158 @ danRer10
Intron Retention
Gene
ENSDARG00000044431 | ppig
Description
peptidylprolyl isomerase G (cyclophilin G) [Source:ZFIN;Acc:ZDB-GENE-040426-2822]
Coordinates
chr6:3535442-3535886:+
Coord C1 exon
chr6:3535442-3535516
Coord A exon
chr6:3535517-3535778
Coord C2 exon
chr6:3535779-3535886
Length
262 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
TCTTTCATCTTTGCATCCAGGTG
3' ss Score
10.1
Exon sequences
Seq C1 exon
CGGGCCGTGTGGTCATTGAGCTTTTCTCTGATGTTTGCCCCAAAACATGTGAAAACTTCCGCTGCCTGTGCACAG
Seq A exon
GTAAATAAAACGTTGGTCGAATACTCTCATCTATGATATGAACACTTAAAAAAAAACATGCACATGACACAGAGTTATGTTTAGGGAAACATATTTTCTACTAAAGCTTTTCAGTAAATGTCATGTAAATGAATGGGACTAATATATAAATAATGCTTTTAGTTGAAAATGGTTCAGAAACATGCACATAACATAACAAATGTTTACAATATCCAGGAACTCTGTATTGCATTTAGAGGGTTTCTTTCATCTTTGCATCCAG
Seq C2 exon
GTGAAAAAGGAGTTGGCAAGACTACTCAGAAACCATTGCATTACAAAGGAACTCCTTTCCACAGGATAGTGAAGGATTTCATGATACAAGGAGGAGATTTCAGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044431:ENSDART00000065256:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.054
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=FE(15.1=100)
A:
NA
C2:
PF0016016=Pro_isomerase=FE(21.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGTGTGGTCATTGAGCTTT
R:
CTTCACTGAAATCTCCTCCTTGT
Band lengths:
180-442
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]