GgaINT0048370 @ galGal4
Intron Retention
Description
NA
Coordinates
chr7:18129713-18132186:-
Coord C1 exon
chr7:18132112-18132186
Coord A exon
chr7:18129821-18132111
Coord C2 exon
chr7:18129713-18129820
Length
2291 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
3' ss Seq
TTCCCCTTCCTCTCCTTCAGGTG
3' ss Score
13.57
Exon sequences
Seq C1 exon
CTGGAAGAGTGGTCTTTGAACTGTTTTCAGATGTGTGTCCAAAGACATGTGAGAATTTTCGCTGCCTTTGCACAG
Seq A exon
GTTTGTAGATTTTAATATTATTTATAATTTCAGATGTAATACCATGCTTGCTAATTTAACATCTGTGTTAACATTTTCCTGACTTGTTTAGGTATAGTACTAAGTACATCAAATACTGGTTCTTGGTATTTCTGGAGATTTAGCAAACTTCTCATATATATCTGATGTAGAATCAAAGCAGTTGTAGTTTTTGGCTTAAGATGTTGCCAAGAGCATGTACTAATCAACTTTAAATGCTGGCACAGTAAGCTGATTTTCTTATACTAGCACAGATACTACTGTTCACATTGTATAACATCATCCATCTTGAAAGGTAGCCAATAAGAGGTCAGGCATGCAGGATTACTTTGCAGTTTTACTATACTTGAATATGTTTGAAAGCTGTTGCTGGTACGCGTTAATATTTTGCTTCGCAGTAGTTTTGTTGAATGCTGGTGATTTCCCCTCCTAGTGAAATTCAAGTTATTTGTTGAAAGAATTACTTAAGATTCTTTCCTAGAAGTGTTTCCAAGTAGGATTATTTCTCGGTGCATTGCCTCTTCTGGTTGGAAATGCTCACAGCTTAGCAGAACTTGAATGTTATCACAAGAATGATTCTGTGAATACGTCAAACTTTGTTTAATGTGTGCAGCATTTTCCACCTCCTTTTCTTTCAGTTTGTTGTCTTTCAGGTCAGCGCTTCATAGCTGTTAATACTGAATCACTTAGTACTAATATGATCTGAATCAGGTGTGAGCACATAATTGCATTCATGTCAAGTTAGCTAGAGCACTTTGTGCAGCATTTATCCTCTCTGCAACAAATGTAAGCTTTATCTCATCTAGGGATTCTGGCTCAGAATCAGGTTATCAAAAATTGCTAAGAAATTTGAACCTTAAAGTGATTGTTTTTATTGGATAGCAGCGTGTTTTCATGTGTCCATGGCATTCTTCTTTTTCTGTCAAATGTCCAAAAGTCAGATTTACTGCATATGTTGTTATTCCCTGATAACTGATTTAGATTTTTCACTTGAAGTCTTTGAACAGCATTTCAGGTCAGAAACACAGTTTGTTGTTTAGTTTAAAATCAAATCAGATTTAAAATCAGGGGCTGAACTATTGTGCTGCTTTAAAATATTTAAGAATAGCAAAGAAAGTATTTTGACAACGTATTTATGATACTGATCGTAAACATTTTAAATTTTAATTTTATTTTCACTTGCCTTTTTTCTGGTGGTTTTGAAAAAGATATGCTATCTTCTCGAAATGGGTCAGCACCTCTGTTTTACTGGCATGCCTGTTAGGTGTGTGGCAGGCCAGCGGAGTATGCAGCTGCAAATTTATCAAAGCTCCTATCAGAAATGTTTTTTGTAGCTGGTCAGATCCATGTGGAGGCGTCAGGTAAGTTCAGAGGCAACTGCCAGTTTCACTGCTTGGAATGAGATTGTAAGAAGATACAGTCTAATGGTTTGGGAGCCATGAAAAGAAGAATCCTTTATCTTTCAGGATAGTCCCTGCTCCTTACTCTTGCACTTTACTGTTACCTTGAGGTTGGCTCTGACATTCATAGGGCTCCTACCATGAGCCATTCATCTGGCTATCTCAGCAGAGACCTTATTTATTTGAAGGTAGGAGCAAAAGTAGGCAGTGTTTTGCTGAGGCAGAGAGCTTGCTTGTGAGTCTGAAGAGCATTAGAACTGATGCAGAGGAGGAGGCTGGTGGTTGGAATCATGAGTTGGGAAGGTAACAAAATTCCTTTAAAATCATTTCTCATTTCCTCCTCCTCCTCTCTTATTTTATTTTATTTTTTCATTTTATTTTTTGGCTATGAGCTTTTATGCTACCTTAGTCCTGTAACTGAAGATCTGAGTTTCTCAACTGCTTCTTAGCAAAGATGGTTATGTTAATCTGGCTGTTTAATTTCAGTCTATCTACGTAGAAGTCTTCTTAGCAGTAGCAGTAATATATTGTCCTCTTACATGTTTAAGCCTCTCCAGGTTGGTGGCATTCTCCTTTATCTGTGTGAGCTCTTAATTCTTTATGAATTAATTGTGGCTGGGCTGGCAAAAAAAGGTTGTTATTATGTTGTATACTAATGTAAGTAAGGATTTCCCTTAGTAGAACTGTAGAAATAAAAAGTAGTTTCCACGTTGCTTTCTTACTGGCATTACCAGTATGTGTCTGCCTCACAAATTAATTTTTCGGAGCTTGGTAGATAGTTTTGATTAAGCATTTAAATAACAAATTTTTGTAATGGAGACTGTACAGATACAAAGAGTCATTTTGTTTTTTGTTCCCCTTCCTCTCCTTCAG
Seq C2 exon
GTGAAAAGGGTACAGGAAAATCCACCCAAAAGCCATTGCATTACAAAAGTTGTCTGTTTCACAGGGTAGTGAAAGATTTTATGATCCAAGGCGGTGACTTCAGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009839:ENSGALT00000015996:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=FE(15.1=100)
A:
NA
C2:
PF0016016=Pro_isomerase=FE(21.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]