DreINT0118301 @ danRer10
Intron Retention
Gene
ENSDARG00000101043 | ppl
Description
periplakin [Source:ZFIN;Acc:ZDB-GENE-041008-196]
Coordinates
chr3:36328215-36330504:-
Coord C1 exon
chr3:36330382-36330504
Coord A exon
chr3:36328362-36330381
Coord C2 exon
chr3:36328215-36328361
Length
2020 bp
Sequences
Splice sites
5' ss Seq
GATGTAAAT
5' ss Score
2.29
3' ss Seq
ATTTGTGTTTGCATTGACAGGAT
3' ss Score
7.64
Exon sequences
Seq C1 exon
TTCCAAAAGGAGGCAAGAGACACCAGTGACTTGATGAAGCGCCTGGAAACAGAGATCAACCAGAAGTATAATCCTGAGTTCAAAGACATGTATCAGATGGAGGGTCTGATTGCTGACCTAGAT
Seq A exon
GTAAATATATTGCATCTATTGGATTTTTCACTATTTTTTTTAATTCATATTATGTGTATGGATAACAGGCAAGCCATTTTGCTTTGGTGTCTGCATTAAATTATATATACAAAAGTGATACACATTGAATGCATGCACGAAGCATCTACTTCAATGTTTCAATTATCTTTTGGTGAAATAAAATATGAAAATATGAGTGAAATGATGATCCATCTTCATGTTTATGTACAAATATGTTTAAATATATCAATGAAGAAGCAACGCTTCTAAATTTGATTCGATTTTAAATGATTGCTGGCACACGAGTGAAACCTATTGGATCCAAAGTATGAAAAATAACAATAAATAGTTTTTCATTCGTTTTTTTACTTTTTTAGTATTATTGTGTATTTCCAGTGCTATTTCCAGAACAGGTGATTTAAAAAAAAAAAAAAAAAAGAAAGAAAATGTCAAATCTCAAAATGATCCGAGGAACATATAAGTTAAATAATGTCTTTTAATATTATTCTTATTCTTTTTTGCTATTTGTCACACTGAAGGACAATTTAATGTAAACACTGGAAAAATTACACTTTGAACAAACTTTAAATAAAAATGACTGTCATTTGTTACAGCTACATTTTTTTTTCCCCTCAAAGTATAATTCAACTTTGTTTCAAATGATAATATATATTTTAATTTAAATGAAAAATATTTATTGTAGTTAAGAAAAAACTTACATTCACGCAAAGTAAAAATACTGTTTCATATCGAGACACTAAATATATATTTTACCATAGATCAAAGTGTAATCATGCTTTGGACCAACCTAAACATGACTGTAATTAGTTACAGCTAAATTTATAAATTACCCTCAAATTATAGTTAAAAATTTAGTTCGTTGGAAAATATTTATTCTGGAAAAAAATATGGAAAAAATGGAAAAAAATACATTGATTCAAATGTTAAATATTGTTTTGATAGACGATGAATTTATTGAATTACTTTTGTTTGACTCAAAATCTAAATCCAAGTAAAGTTGTACTTTGGACTAAACCATAATAAATACATATAATGTTAGTCTATGCTATTGACAGTTATTTAATTTTTCAATAATTAGCTAAAGTATAGCTCCTTTCAGTATGGATTTAAATATGCAAAATGGTGAAGAAACACACATTAGAAATACACTACCGGTCAAATGTTTGGGGTCAGGGTTTTTCTTTTTTTTTAAGTTATTCTGTTCATCAAGGTGGCTTTTAGAAAATATTAAAATAAAATGTGTTGATTATTTATAAAACATTTAAATTTTCAATTTCAACATTAAGATTTCTTATTGTATGTCGTTTCAAATGAAATGATTACTCCAGTCAGTATTGCTTTTATTACTATTAACATTATTATTAATACTAATTATCATTATATTACTACTAACAATAATAATTAATTTTGGAGGGATTTCTGAAGGATCATGTGACACTGAAGACTGGAGTAATGAAGCTAAAAATTCATCCTTAATCACTGGAAAAATGATTCAATTAAATGATAAACTACTTTTGAACAGTTATTTTAGAGTGCAATAATATTTTTGACCATTTTACAGGTTTTACAAACCTTTTTCATGTGGTCACATGACAATAAATCTGCTGCTGTAAAGTAAAAATATTTCTTTGTGCAAAACTAATGTTTTCAAGTTTACCTAGGTGGTCCCTTTTTTTTTTTTTTTTTTTTTTGCTTAAAAGTAAATTGAATAAAACGTCATAATCAAAAACCATAATTTAACATGACTCCTAATCCAATATAAAATGTACTTTGAATGAAAGACACTGTAGATTAACTTTTTTCAGTAAATGTTAATAATAAATTGCACAATAATCATTAATTTTTTAGGAAAACATTATTAAACAGGACTCATTTTAATGTAAGGGGAAAAGCTATATAACACGTACTGTTTTGATACAGGAAAACACCCTTTTCATTTTAAATCTTTTTTTTAAAGTGTGTTCACTCTATATGAAACTATTTGTGTTTGCATTGACAG
Seq C2 exon
GATCAGGCAAAGGCCATGGACCACTTCGACGAGCGTCTGAAAAACCTCCAGAAACGCAGCTTGCAGGTTCTCCCTCTGAAGTACCGCAGGGAGACTCCTCAAAAACTGCTCCCTATCGAGGCTCTGTGTGAATACGATGCAGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101043:ENSDART00000157729:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.098 A=NA C2=0.041
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]