GgaINT0013025 @ galGal3
Intron Retention
Gene
ENSGALG00000002201 | Q6PVZ7_CHICK
Description
NA
Coordinates
chr14:14030663-14031636:-
Coord C1 exon
chr14:14031514-14031636
Coord A exon
chr14:14030810-14031513
Coord C2 exon
chr14:14030663-14030809
Length
704 bp
Sequences
Splice sites
5' ss Seq
GATGTGAGT
5' ss Score
7.77
3' ss Seq
TGCTCATTCCCCCATGCTAGGAC
3' ss Score
8.15
Exon sequences
Seq C1 exon
TTTCAGAAAGACGCAAAGGACGCCCAGCAGCTCTTGAAGAAAGTCGATACGGACCTGGACCAAAAATACAGCCCAGAGTTCAAGGACAGATACCAGCTGGAGTCGCTCCTCAGGGAGCTGGAT
Seq A exon
GTGAGTACTGGCAGATGGAGGACTATGGGATCCGGAGCACCTCCACGGTGCAGCCCCCATGGGGATGGGCACCCTGCCCTGCTCGCTGGCCATGCTGCTGCCTCCCTTCACTTGGCTCCTTCCTCTGCCTTGAGCTAGGGATTGCCTCTCCCACAGCAACATAATTGCTCACCGAGCTGGTTTTTATTTGTTCTCCCATTGAGCTGGTGCTCATAGAGGGTAGGAGCATAATTAGACCCACTGCCAGAGGAGGCGGTGGAACGAGCTGTGCTGGGACCTGGCTGTGGGTCGAGCATGATGCAGCACTGCTTAGTGCAGTGATAGCTCTGCCCCATGGGTGCCCCTCTCCTCCCACCCCAGTGACCGTTGCAGGATACCCACCTGCACGGACACAAATAGAGCAACCCACTCAGAGCTTTGTAAGGTGCTCATTACAGCTAATTGCTGGGAACAGGGTTATCCCAGCACCACGCTCCATGGACCAGGCACCAGGCACAGCGACCCCTTCCTCAGCCTGGCTGTAGGAGCACTCAGTACATGATCCCAGTGGCTGCAGGGCAGGACCCAAAAGCCATCCTCTGTAGCACAAGCAAAGGAAGCTGAGGGCTCTGCCAGTCAATAGAAGCTCTTCCCAGCTATGGGGGCACAGGAACGCATCACTTCTCCCTCCTTCCCACGTTTCTTTGCTCATTCCCCCATGCTAG
Seq C2 exon
GACCAAGAGAAGGCCCTGGAGAAGTACGATGCCGTGGTGCAGTCGCTGCAGGAGCGCAGCCAGCACATCCTGCCCCTGCGGTACCGCCGGCTGCCACCACCACAGCCCATCCCTGTGGAGGCTCTGTGCGAGTATGAGGGCGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002201:ENSGALT00000003446:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=NA C2=0.122
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCAGAAAGACGCAAAGGACG
R:
CTGCTCGCCCTCATACTCG
Band lengths:
270-974
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]