DreINT0118312 @ danRer10
Intron Retention
Gene
ENSDARG00000101043 | ppl
Description
periplakin [Source:ZFIN;Acc:ZDB-GENE-041008-196]
Coordinates
chr3:36321151-36322202:-
Coord C1 exon
chr3:36322086-36322202
Coord A exon
chr3:36321244-36322085
Coord C2 exon
chr3:36321151-36321243
Length
842 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
ATTATTGTTGTGTTCTGAAGGAA
3' ss Score
6.51
Exon sequences
Seq C1 exon
GACTATGAAAATGAAGCAGAGCGGTTTAAATCCATCCTCGACCTTGAAGACGGCTTGGTTCCCCAGACATACAAAAGGAGCAGACTTGAATCTCCTGCCATGAAAGTGAATAGAGAG
Seq A exon
GTGAGCATTTTTGCATCTAGCATACTTTGTAAACCGTCACATTGAGGAAATAATTATACCCTTTTTAGCCTTTTAAGCTACTTAATCCTATGTTTTCCTAGAAAATTTAAATATTCAAATGATGTCATTAGTAATCCCTTGAAAAAAAAACAATAATTAATTTATACACTTTGCATGAAAAGTATGTTTTAGGGTAAGTCACAATTTTGTAAATTGAATTAACATATCTCTGCAGTTGTCAACAGAATCAGTCTAGGCTTTAGCACGTTCTAGGATTGTTACTGTACTTACAAACTCTTATTTTACACTTGTAAGCCTACTGGGCACAAGACAAAAAATGTTTTTTACAGGAATGGTTACTTTTCGTAGCATTAATTGTAACAATAAACCTTTAATTTAGAGCAGTATTCACTTTAATAATCATTGCGATTGTCACTGTAATTTGTCACAGAAACTTTTCAGTGCACCCTCTATGTGTGTAAGCAAATGTACAGTATACTTAAATGCATTTTATTATCCAATGGTCACTACTGTTACCATCACTGTTTTTACTTATTCTATGACCACCACACTCAATACAAAAACACTTCATTTTAAGATCTTTATTATATATTTATTTATATTTAAGCAAACTTTATTAACCTTTTGATTCTCTGGTGTAAACGGAAGTTAAACTGCTCCAGTCGCATGAAAATGTGCATTAACCATGTGACACTTCACAAATTTGATTGAGATATTTTTTTCGTACGTGCAGGAAATGCTCAAGTCAGTACTATTTTTGAAGCTTTTTAGATTAGAAGGTCTCTTTACAGTCACTGAAACATTATTGTTGTGTTCTGAAG
Seq C2 exon
GAATCTGCAATTGAGGCAAAATTCACCGAAGTAAATGCTGTGAACAAGCAGAGACTGCAGAACCTAGAATTTGCCCAAAGCCTTCTTAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101043:ENSDART00000157729:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=NA C2=0.129
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAAAATGAAGCAGAGCGGT
R:
CTGGTTAAGAAGGCTTTGGGCA
Band lengths:
206-1048
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]