RnoINT0116062 @ rn6
Intron Retention
Gene
ENSRNOG00000002930 | Ppl
Description
periplakin [Source:RGD Symbol;Acc:1305511]
Coordinates
chr10:10684577-10685220:+
Coord C1 exon
chr10:10684577-10684693
Coord A exon
chr10:10684694-10685127
Coord C2 exon
chr10:10685128-10685220
Length
434 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
GTCCTAAAATGTCTCTGTAGGAA
3' ss Score
8.47
Exon sequences
Seq C1 exon
GACTATGAGCTTGAAGCAGAGAAGCTAAGGTCCCTGCTGGACCTGGAGAACGGACGGAACAGCCATGTGAACAAGAGAGCCAGGCTGCAGTCTCCTGCTGCCAAAGTGAAGGAAGAG
Seq A exon
GTGAGCTGTAAGTGAAGACTGCTGAGGGTTCTCCGGATGCAGTCCTCTGCAATGCATGTGGAAGAGCAAGAACTTGCTTTGAAGCAGAGACATCGATATGCAAGGCAGGCTTGTAGGGATTCTGGTCCAGTGCCAGACACATGGGAGCTCCCACCTTGCTCCCCTATGCAAGTCTGTAGTAGAAGGCAGTACAGCCTGCAACGGCTGTGAAAAGAATACTTAGAGAGACTTGCTCAACAGTTATGGACCAAGACTCAACGTGGGTCATCTCAGACTACCTTTCCACCAATGGATGGAGCTATGTCTAGGAATGGGCAAGAAGTACCCCTTTCCCCGCCTGCCAGGCCCTTCCCAGACTGTGTACAGGTGTTCTCACTGTTTTCCCCTAGCCTTTTGGCTTGTCTGCTAACTGTTGTCCTAAAATGTCTCTGTAG
Seq C2 exon
GAAGCTGCTCTTGCTGCCAAGTTCACAGAAGTTAATGCCATCAACAGACAGAGGCTACAAAATTTGGAGTTTGCACTGAATCTCTTGAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002930:ENSRNOT00000004026:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.564 A=NA C2=0.194
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCAGAGAAGCTAAGGTCCC
R:
CTGTCTCAAGAGATTCAGTGCA
Band lengths:
198-632
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]