DreINT0120748 @ danRer10
Intron Retention
Gene
ENSDARG00000057583 | prrc2c
Description
proline-rich coiled-coil 2C [Source:ZFIN;Acc:ZDB-GENE-081104-156]
Coordinates
chr20:15154982-15155982:-
Coord C1 exon
chr20:15155895-15155982
Coord A exon
chr20:15155166-15155894
Coord C2 exon
chr20:15154982-15155165
Length
729 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
3' ss Seq
TCTTTCTTGCTAAACCAAAGGGA
3' ss Score
3.28
Exon sequences
Seq C1 exon
GTGCCCAAATGGAAGTTGACTATACCGAGAAGCTGAATTTTAGTGATGATGAAGAGAACCATTCAGCTAAAGAGAAAGCCGATAACTG
Seq A exon
GTAAGCATGCATGTTCGTTATGTTTGTAATTTTATGCAATTTTTTTTTTTTTAATCTTATTTAGTCAGTGCTTCCTACAGGTTTGAAATATGCTTGTGGTGGTAGCTAGATTGAAACACACCTTTTATCCATGGCACATGGTTAACTACATGCGTAAAAAACAAGTGCTTTTTAGCAACATTTTTATTTATTATGACACTGTTATACACTGTTTCTTTTCACTGGGTTGGAAGATTTTTATTTTTAATACTGGACATAAAAAAAACAAATCTACTGTTGCTATTATTCTTTAACTTTTATTCTATTCAGGAGCCATTTGCACCCATGTAAAATCTGCTGCTGACAATTTGTACAGTATTGCCAAAGCATGTTAGATATGTAAAAATATGTAATATATCAACTACATCAAAAAATAATAATAATACAGCAAGTGAGAAATAAACGACAGCGAAATAAAAACAGACAATATCTCTAAAAAGTATTATAATAACAAGAATAAAGTTTTAGTTAAACTGATTATTTAATGTTTTCTCACTCTTGCGGCTGCACACGTTGTCAGTGATAAAAACACATAATTAGTGATGATTTTAGAAACCTTCTAAAAGCGGTCCCAAAAGGTGCGTCTCCGCGGGTCTCTGTGGAGCACTTGAGATTGTCTGTCAGATTGTTGTCAGTTCTTGTGCACACACAGTGAGTAAAACAGTAAAACTCTTTCTTGCTAAACCAAAG
Seq C2 exon
GGAGTGGATGGCTAAAGTTGATCGCATGCGGTCAAGGAATGCTGAGGTCCAGGAGGGATGGAAGGAAGGTACAGAGGAGAGGAGTGATGGCAAGAGCTCATGGGGTGAAAGTGGAGACCCCAGGGCTCCCTCTCCTGGCAATATTGTCCATTATAGCAAGAATATAATGCCACAAGACCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057583:ENSDART00000135212:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCCCAAATGGAAGTTGACT
R:
CTGCTGGTCTTGTGGCATTAT
Band lengths:
272-1001
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]