GgaINT0035895 @ galGal3
Intron Retention
Description
NA
Coordinates
chr8:4897609-4898117:-
Coord C1 exon
chr8:4898030-4898117
Coord A exon
chr8:4897751-4898029
Coord C2 exon
chr8:4897609-4897750
Length
279 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
TTTCTCATCTCTTTGCACAGTGA
3' ss Score
7.68
Exon sequences
Seq C1 exon
GTGCTCAGAGTGAAGTGGATTACACTGAACAGTTGAATTTCAGTGATGACGATGAGCAAGGAAGTAGTCAAAAGGAGAAGGAAAGTGG
Seq A exon
GTGAGTTGGAGCTGCTAGTTGTGTGTGAATGCTACATGGCTAGCTTAACTTTTGGGAAACTTGAATGAAGTGAGTGTGTGAAGTACTTCAGTAATACTTATTTCAGTAATTAAGTACTGTATTAAGCTGTGTAACTGTCTGCAGCCTGTGGAGCATGAAGTTGAAGTGATTTTTCTTGTGAGAATCTTTCACTCTTGCTTAGAGATGTTGAGGATGGAAGATAAATCACCAAAGCACTGTATAGAATATTCCTTCCACTTTTCTCATCTCTTTGCACAG
Seq C2 exon
TGATGAACAAACACCATCAAAAGATTCTCAGAGCCCTGATGGCCAGAAAGAAGCAGAAGAACAGACAAATGCTAAGTCTGCCACCCAGGCTTCTGCAGCAGCAACCAAAGGATCTTATGGCAAAAGTTCTCAGCTTGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003290:ENSGALT00000005210:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTCAGAGTGAAGTGGATT
R:
TGATCAAGCTGAGAACTTTTGCCA
Band lengths:
229-508
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]