HsaINT0016730 @ hg38
Intron Retention
Gene
ENSG00000117523 | PRRC2C
Description
proline rich coiled-coil 2C [Source:HGNC Symbol;Acc:HGNC:24903]
Coordinates
chr1:171523435-171524965:+
Coord C1 exon
chr1:171523435-171523522
Coord A exon
chr1:171523523-171524820
Coord C2 exon
chr1:171524821-171524965
Length
1298 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
TCTGCATTTTGATTTTTCAGTGA
3' ss Score
8.24
Exon sequences
Seq C1 exon
GTGCTCAGATGGAAGTAGATTATACAGAGCAACTGAATTTCAGTGATGATGATGAACAAGGAAGTAACAGTCCTAAAGAGAATAACAG
Seq A exon
GTAAGTTGTGATATCTTTTACTAATAACAGTATGAATTTGTTGATACAATATTAGCTACTTATGCAAAGAAGCTTTGTTAATAGACAATTGTTTGTTATTTGTAGAATTTATATATTCTCAGAAGTTTTACTGAATAGAGGGTGCTTAATGAGCTAGATTAATACAGTATACAGCTAATCAAGGAATTAAAATTTGATGCGTCTCAAGAAAGTTTATTTAAAAACATTTAGGGCTGGGTGCGGTGGCTCACATCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGCAGATCACTTGAGGTCAGGAGTTCGAGACCAGCTTGGCCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAATTATCCAGGCGTGGTGGTGCATGCCTGTAATCCCAGCTACTCAGGAGGCTAAGGCAGGAGAATCACTTGAATCCGGGAGGCGGAGGTTGCAGTGAGCCAAGATCATGCCACTGCACTCCAGTCTGGGTGACAGAGCAAGACTGTATCTCAAAAAAAAAAAAGATATTTAGATGCTTGGCACCTAGTTTGGAGATCTTTTGAGAACTGGTATTAGGAACAATTTTTTAAACTGTTACTTGCTTGACCTGATCTGTATTTACAAAATTGGAGAATAATTCCCTGGGTTACTACAGCTTTTTCAGGTCCTCGATTTCTTAAAACTTAGTAAACTGCATTAGGGCCTTGGAAAATGGGGAGCTTTTTATTTCTTTTTCCTTCATTCTGGAATATTGGAGCACCAGTCAGGAATATATGGGTTATATATCATAAAAGTTGGGCTTTTAAAATATATGGAAGTTTGGAAGCACATTTGGTATAATTTTTCAGTTATGGCATTGTGACAAACATCGTTTTATGATCGTTTAAGAGATACCTGTGGTTTGTCGTGGCTTTGAAAAAATACTGTAGTTTGATTTATCTTTTTATTAAATCAGAATAAATTAGAATGCAGTTAAATAATAATTCCAATATTACCCAGTTACATTTGGATTGTATTTCTTATGTAGAGGAGATAGGAAATGATGTGATTATATTCTTTTGCCAGGATATATGCCTGACATGTGTGTTTAGATTTGACAACTACTGTATTGCACTTTCATAGTATATATTTATTGAAAGAACAAATTAGCACTAATGGGTCACACACCCATCTCATTCCTTAATACATTTCCCCCCCCAGAAACCATACAGAAATAATTTTTTTAATTGCAAAAATAATGTGTGTACTTATGATACAGTTGGTCCACTTTATTTCTTCTGCATTTTGATTTTTCAG
Seq C2 exon
TGAGGATCAAGGTTCAAAAGCCTCTGAAAACAACGAAAACAAAAAAGAAACAGATGAAGTTTCCAACACTAAATCATCTTCCCAAATACCTGCCCAACCATCAGTAGCAAAAGTTCCCTATGGGAAAGGACCTTCATTTAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000117523:ENST00000367742:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTCAGATGGAAGTAGATTATACA
R:
TGATTAAATGAAGGTCCTTTCCCA
Band lengths:
232-1530
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains