DreINT0120790 @ danRer10
Intron Retention
Gene
ENSDARG00000053158 | prss56
Description
protease, serine, 56 [Source:ZFIN;Acc:ZDB-GENE-070912-579]
Coordinates
chr2:45204964-45205242:+
Coord C1 exon
chr2:45204964-45205120
Coord A exon
chr2:45205121-45205215
Coord C2 exon
chr2:45205216-45205242
Length
95 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TTTTTTGTATTTTTTTGTAGACG
3' ss Score
9.6
Exon sequences
Seq C1 exon
TTTAACCCAAAGACGTTCAATAATGACATTGCTCTGGTGGAGCTGAGCTCTCCGGTGATTCTGTCTGAACGGGTCACTCCTGTCTGTCTGCCCTCTGACTTGGATCCTCCGGCTGGCACACCCTGTTTAGTGGCCGGCTGGGGATCTTTGTATGAAG
Seq A exon
GTAAGAGACGATGAAACATGACTCAATTTTTAGAAAGAGCACAGTAACATTAAAAGATATACGTTAAGGATGCTGTTTTTTGTATTTTTTTGTAG
Seq C2 exon
ACGGCCCATCTGCAGATGTGGTGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000053158:ENSDART00000075152:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(36.6=100)
A:
NA
C2:
PF0008921=Trypsin=FE(20.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAATAATGACATTGCTCTGGTGGA
R:
CCATCACCACATCTGCAGAT
Band lengths:
168-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]