RnoINT0118823 @ rn6
Intron Retention
Gene
ENSRNOG00000029865 | Prss56
Description
serine protease 56 [Source:RGD Symbol;Acc:1563955]
Coordinates
chr9:94281157-94281707:+
Coord C1 exon
chr9:94281157-94281316
Coord A exon
chr9:94281317-94281564
Coord C2 exon
chr9:94281565-94281707
Length
248 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTG
5' ss Score
7.76
3' ss Seq
GCTTTCCTGCTTTCCTGTAGACG
3' ss Score
9.29
Exon sequences
Seq C1 exon
TTTGACCCGCAGACTTTTCACAATGACCTAGCGTTGGTACAGCTGTGGACGCCTGTGAACTCAGAGGGGCCTGCGCGCCCCATTTGCCTACCCGAGGGTTCTCGGGAGCCTCCTGCCGGCACTCCCTGCACCATCGCAGGCTGGGGGGCTCTCTTCGAAG
Seq A exon
GTATTGCCAGCTAGGGCCTGGTTAAGCTAGCTGCAAGTAGTAGTGAAGGACCAGTGGGGGCAGGGTGGTGGTGATGGGAAAGGGGGAGGGGAAGAGGGAGAGGAGGAGGAGGAAGTAAGCTGAAGGGATTGGAGAGGCTAGGATGATGTTCCATGGCACAAACCGGCAGGAATCAAAGAGGGCTAGTGAGAGGGGATCTCCAGACACAGCCTCTGCCTTCCAAACCCGGCTTTCCTGCTTTCCTGTAG
Seq C2 exon
ACGGGCCTGAGTCTGAGGCAGTGAGGGAGGCCCGCGTTCCGCTACTCAGTGCAGACACCTGTCAAAAGGCCCTGGGGCCTGGGCTGAGTCCCAGCACCATGCTCTGCGCTGGTTACCTGGCAGGGGGCATCGACTCATGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029865:ENSRNOT00000065805:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.204 A=NA C2=0.125
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(23.2=100)
A:
NA
C2:
PF0008921=Trypsin=FE(20.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCCGCAGACTTTTCACAA
R:
CTGGCATGAGTCGATGCCC
Band lengths:
301-549
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]