DreINT0121182 @ danRer10
Intron Retention
Gene
ENSDARG00000059046 | psmd5
Description
proteasome (prosome, macropain) 26S subunit, non-ATPase, 5 [Source:ZFIN;Acc:ZDB-GENE-050417-28]
Coordinates
chr21:5206048-5208175:-
Coord C1 exon
chr21:5207984-5208175
Coord A exon
chr21:5206158-5207983
Coord C2 exon
chr21:5206048-5206157
Length
1826 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CATGATGTTTTCTCCTCCAGGTG
3' ss Score
12.65
Exon sequences
Seq C1 exon
GCCTGGTGAAGTTTTTTGGCAGTCTGGCGATCATGGACAGCCCTCAGCAGGTGTGTGAGAAGTATCCCGTGTTTCTTGAAGTGGTTTTCTCCATGGTAATGAACCTTGACCCCACATTGACTCCTGTTGCCCTGGATACGCTCGGGGTGCTGGGTGGTACGGTGGAGGGCAAACAGGTCCTGCAGAAAACAG
Seq A exon
GTGAGCAAACGCATACATGAACAGTAGACCAATCACAGCCTGTGATTTATGTTTCATATTTGCGATTAATAAAACCTCCCAGTAGCATACATGCAGCACAATCCAGTCGCTGTAATTTGATTCACATTCTGAATAAAATCAAAATATGTCCAAATTTAAATCGCAAATATTCTCAAATGAATTAGAATAAGAACCAAATCAAAATCTGAACTGATTCAGATTGGAAGCTTTTAATCAAAATCCAGATTACAAATATTCTCAAATGAATCCAATTCACAATCTAAACTGAATCAGAATGGAAGTTTGCGACCAAAATCCAGTTTGCAATTATTTTCAAATGAATCAGAATCAAATCAAAATCTGAACTGAATCAGACTGAAAGCTTGCAATCAAAGTCTGGATCTCAAATATTTTTAAAAGAATCAGAATGTAATCAAAATCTGAACTGAATAAGAATGGAAGCTTGCAGTCAAAATCTAGATTGCAAATATACTCCGATGAATCTGAATTGAATCACAATCTGAACTGATTTAGATCATAACCATGCAATTAAAATCCATATCTCAAATATTCTTAAATTCTTCAGACTCGAATCAAAATCTGAACTGAATCAGATTGGATGCTTGCATTTAAATTGCAGATTGCAAATAATCTCAAATGAATCAGAATCTAAACAATATCTGAACTGAATCAGACTGGAAGCTTGCAGTCAAATCCAGATTGCAAGTGTTCTCAAATGAATCAAAATCTAATCAAAATCTGAACTGCATCAGATTCAGATTAGAAGCTTATAATAAAAATACACATTGCAAATATTCTTAAATGAATCAGAATCACAATATGAACTGAATCAGATTATAAACTTGCAATCAAAACCCATATCGCAAATATTCTCAAATTAATCAGAATCAAATCAAAGTCTTAACTAAATTAAATTGGAGCTTGCAATCGAAATCCACATAGCAAATATTCTCAAATGAATCCAAATAAGAATCAAATAAAAATATCAACTGAATCAGATTCAGACTGCAATCTTTGAGCAAATATTCTCAAATAATCTGATTAAAACTCTGAACTGAATCAGGTTTGAAGGTTGTGATCAAAATCCAGTACTCAAATATTTTCAAATGAATTGTAATCAAATCAAAATCTGAACTGAATCAGACTGAAAGCTTGCAGTCAAAATCCATATTGCAAGTATTCTCAAATAAATCAAAATCGAATCAAAATATGAACCTAATCAGATTCAGATTAGAAGCTTTTAATAAAAATCTACATCGCAAATATTCTTAAATGAATCCGAATCTGAAAATCTGAATCAGATTATTAACTTGCAATCAAAACCTATATCTCAAATATTCTTAAATGAATCGAATTTGAATCAAAATCTGAACTGAATCAGATTGGATGCTTGCATTCAAATTGTAGATTACAAATAATCTCAAATGAATCAGAATCTAATCTATATCTGAACTGAATCAGACTGGAAGCTTGCAGCCAAAATCCATATTGCAAGTATTTTCAAATGAATCAAAATCGAATCATAATCTGAACTGAATCAGATTCAGTTTAGAAGCTTTTAATAAAAATCCACATCGCAAATATTTTTAAATGAATCCGAATCAAAATCTGAACTGAATCAGATTATAAACTTGCAATCAAAACCCATATCGCAAATATTCCTAAATGAATCAAATTTGAATCAAAATCTGTACTGAATCAATTTGAAAGCTTGCAGAATCCAACCCAACAAAACCCGTAAATATGCACCCAGCCATAGCCATATTTGTGAATGTAGATTTTTCCCATGATGTTTTCTCCTCCAG
Seq C2 exon
GTGAGAAGTTTGTGTCGGTCTTGAAGAGGATGAGTAAAGTAGCGTCTGACGGAGCCACTGAACTGAGAGTGCGCTGTCTGGAGGCTCTAGCTCAGCTGCTCACGCTGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059046:ENSDART00000146061:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF105084=Proteasom_PSMB=FE(12.7=100),PF124633=DUF3689=PD(23.3=52.3)
A:
NA
C2:
PF105084=Proteasom_PSMB=FE(7.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTCTGGCGATCATGGAC
R:
CGTGAGCAGCTGAGCTAGAG
Band lengths:
278-2104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]