HsaINT0133602 @ hg19
Intron Retention
Gene
ENSG00000095261 | PSMD5
Description
proteasome (prosome, macropain) 26S subunit, non-ATPase, 5 [Source:HGNC Symbol;Acc:9563]
Coordinates
chr9:123583633-123586963:-
Coord C1 exon
chr9:123586772-123586963
Coord A exon
chr9:123583743-123586771
Coord C2 exon
chr9:123583633-123583742
Length
3029 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
3' ss Seq
CTCACTGTTATCCTTCAAAGGAA
3' ss Score
7.64
Exon sequences
Seq C1 exon
GATTCGTGAAGTTTTTTGGAAACCTGGCTGTCATGGATAGTCCTCAACAGATCTGTGAGCGTTATCCTATCTTTGTGGAAAAAGTCTTTGAAATGATAGAAAGTCAGGACCCCACTATGATTGGTGTAGCTGTAGACACAGTTGGAATCTTGGGATCCAATGTTGAAGGAAAACAGGTTTTACAGAAAACAG
Seq A exon
GTTGGTATGACTTGGCCCTGTTCAGGGATATCTTAATCTTTGACAGGGGTTCAATATGTAAGTTCATTTGCTGGTGGGTTAACTACATTGTAGAAACTATTTTATGGGTGGCAGTCTTGTTAACCATGACCTTGTACTCATGTCTGAAAATCTAATAATTATTACGGAAAACCTTTTTTTTTTTTTTTTTGACTTTTCACTGGTTTAGGTTTTCATTGGTTTAGGTTTCTACCAATCGATTTCAACCAAACATTGTTTCCTGTTTCCCCTCTATGATGTCTTCTTTGACTAGATTTCATGGTACAAAGACCACGGGCTAGAGTCAGAAAGGTCTGGATTCATGTCCTTGGGTTTTCTATTCTTTTTTTTTTTTTTTTTTTTTTTAAGAGATTGAGAGTGTCTCTCTGTTACCCAGGCTGGCCCCGAACTCCCGGGCTCAAGCAATCCTCCTGCCTCATCCTCTTGATTGGCTGGGTCTACAGGTCCACACCATTGTATCCAGCCCTGACTTTGCTTTTTGAACTTCATTTACTCACTTCACTTTTCTAGGCCTCATTTTCTTCATTTATAAAAATGGCATAACAACTGCTTCTCAGGGTTGTTGTGAATATTTATGAAATTTTGAGAAAGGAAAATAAAAGTTTGTTATAAGATTTCATGTTAAGAGATACTTTTGGCATGTTAAGAGATACAATGGTTCATGCCTGTAATCCAGCACTTTGGGAGGCTAAGGTGGGTGGGTTGCCTGAGCTCAGGAGTTCAAGACCAGGCTGGGCAACATGGCAAAATCCTATCTCTACTCAAGAATACAAAAATTAACCAGGCATGGTACTGCACAACTGTAGTCCCAGCTACTTGAGAAGCTGAGGAAGGAGAATCTCTTGAACCTGGCAGGTGGAGGTTGCAGTGAGCTGAGATCATGCCACTACACTCCAGCCTGGGTGACAGAGTGAAATTCTATCTCAAAAAAAAAAAAAAAAAAAGAGGCCAGGTATGGTGGCTCATGCCTGTAATCCCAGCATTTTGGGAGGCCAAAGCAGGTGGATCACTTGAGGTCAGGAGCTCGAGACCAGCCTGGCCAACATGGTGAAACCCTGTCTCTACTAAAAGTACAAAAATCAGCCAAGCGTGGTGGTGCATGCCTGCAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCATGAACACAGGAGGTAAAGGTTGCAGTGAGCCGAGATCACACCACTGCACTCCAGCCTGGGCGACAGTGCGAGACTCTGTAAAAAAAAAAAAAAAGAAAGAAAGAAAGATACTTTTATGGAACATCCATGAGGATCAACAGCACAACAAATTTTACACACAAAATAATATGCAGCCCAATTATTAAAATTCTTGAGACACATATGTTGAAAATTATCTCACCTGTAATCCCAGCACTTCAGGAGGCCAAGGCGGGAGGATCGTTTGAGCCCAGGAATTCAAGACCAGCTTCGTCAACAACAACAACAAAAAAAATTAGCCAGCTGTGGTGGTGCATGCCTATAGTCCCAGCCACTCGGGAGGCTGAGGTGGGAGAATCATTTGAGCCCAGGAGGTGAAGGCTGTAGTGAGCCTTGATCACTCAGTTGCACTGCAGCCTAGGTGACAGAGTGAGACCCCATCTCAAAAAAAAAATTTAAAAAGAGGCCAGGCGAGGTGGCTCATGCCTGTAATCCCAACACTTTGGGAGGCCAAGGTGGGTAGATTACCTGAGGTCAAGAGTTCGAGACCAGCCTGGCCAACATGGTCTCTACTAAAAATACAAAAATTAGCTAGGTGTGATGGCAGGCGCCTGTAATCCCAGCTACTCGGGAGGTTGAGGCAGGAGAATCGCTTGAACCTGGGCCGTGAGTCGAGATTGCGCCATTGCACTCCAGCCTGGGTGACACAGCAAGACTCCATCTCAAAAAAATAAAAATTAGAAAATAGAAAAAGAAAAAAAGAAAATTAATACGCTGTTGTGTATCACAGCTAATATTTTTGTTATATGTCGTTTTCTAAGTGCTTTTACCTATGACAATCGTTTTACAGTCCTGCAAAGAACATACATTGTCATTTTCATTTTCCAGATAAGGTAGATGAAACTTAGAGGAGTTAAGAAAATTTCTAAGGTCATACAAATTATGGCAGCTGCTACTCAAGTCCAGGTCCTTTGATTCCAGTTTTATAACTTTGCCTTATATATGCTGTGTTGCGTGTAATTATGTGTTCTAGGCCTGTCACTGGTTCTCTGACTACATGCTTATTTTTGTATTGGTTTAGGTTGGTAGAGGTCATAGTGTATGAGAGCATACTTTAAAAAAATCTCATTTTTCACTTCATATCCATTAGGATGGCTATTACTTTAAAAAAAAACCCATAAAATAATAAGTGTTAGGATGTGGAGAAATTGTAACCCTTGTACATTTTATATTTCCTTCATCCAGCAGCTCCACTTTCAGGTATATACCAAAAAAAATTGAAAGCAGAGACTCAAACAAATGTTTGTACAGTCATGTTCATAGCAGCGTTATTCACAATAACCAAAAAAAGGTGCAAGCAACCCAATGTTCATTGATAGATGAATCAATAAACAAAATGTGGTATATACATACAATTGAATATTACTCAGCCTTTAAAAAGAATGAGATTCTGGCACATGCTACAGCATGGAGGAAGCCTGCGCCACTGATAACATTATGCTAAGTGAAGTAAGCCAAACACATAAGGACAGATATTGTATGATTCCACTTAGATGAGATGCCTAAAAGAGTCCAGTTCACAGGAGGTAGAATAGTGGTTGGCAGGGGATGAGGGTAGAGAAGAAAGGGAATTATTGTTTGATGGATACAGAGTTTCAGTTTGGGTTGATGAAAAAGTTCTAGAGATGGATGGTTATGATGGTTGCCCAACAGTGTGAATGTACTTAATAGCACTGAACTATACACTAAAAATGGTTAAAATGGTAAATTTTATGTTGTGTATATTTTACCATAATAAAGAAGAATCTCACTGTTATCCTTCAAAG
Seq C2 exon
GAACTCGCTTTGAACGCTTGCTTATGAGAATAGGACATCAATCAAAGAATGCCCCAGTGGAGCTAAAAATTAGATGTTTGGATGCAATTTCATCTCTTCTGTACTTACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000095261-PSMD5:NM_005047:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.024
Domain overlap (PFAM):
C1:
PF105084=Proteasom_PSMB=FE(12.7=100)
A:
NA
C2:
PF105084=Proteasom_PSMB=PU(35.4=96.6)
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)