DreINT0123117 @ danRer10
Intron Retention
Gene
ENSDARG00000014101 | pyroxd2
Description
pyridine nucleotide-disulphide oxidoreductase domain 2 [Source:ZFIN;Acc:ZDB-GENE-050506-147]
Coordinates
chr13:40167973-40171140:-
Coord C1 exon
chr13:40171068-40171140
Coord A exon
chr13:40168130-40171067
Coord C2 exon
chr13:40167973-40168129
Length
2938 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGA
5' ss Score
10.65
3' ss Seq
TGTGTTTTGTAATTGAGCAGTGG
3' ss Score
3.05
Exon sequences
Seq C1 exon
GATGCCCTGCCAGAGGCTTTCATCACAGCTGTAGATCAAATTGACTACACCTCTCCTGTTACCAAGATAAACG
Seq A exon
GTAAGATAAGCGATCATTTAACGCTTCATTTCATCAAACCAAACATGCATTTGCTTAAGCAAAAAACATGCTTCCAACGCAGCAAATAAGTAGCGTTAATATTTTAACACTTTGATTTTGTGTAAACAATTCAGCAACCTTTAGACATTTTTCTTGACACTCAGCAAGCAAAACAAGACAAAGATAACTCACTATGCATGAAGTATAATCATTGATAAATGTAATAGCCTATTTTAATAAATGGCAAAGGCATATGCTGATGTTTAAATGAACACAAATCTGACTCTGAATCACAAAGTCTTATTGCATGGGTACATTTTTTGGAATAGCCAAAACAAATTGCAAGGGAGAACATGGAAACTCCACACAGAAACGCCAACTGAGCCGAGGTTTGAACCAACGACCCAGCAACCTTCTTGCTGTGAGGCGACAGCACTACCTACTGTGCCACTGCCTGGCCCTATTATTACTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATATATAATTATATTATATATTATAACACCAAGCAGATTTATGTTAACTGGAATTTGTCATTCTGCTTACAAATTGTTTCTCTTTTGTTGTACTGATGGCTTCTTTGGTCTCATTTGAAAGTTGCTTTGGATAAAAGTGTATGCTAAATAAATACATGTAAATCTCAATGTAAATACACTACCATGTTTCTCCATGTTTAGTTCCTCTTGCAACATTTTTCCAAAAACAAAATGTAAAGTCTTGCCTCATGTAAATGCCTTAAAGGGATAGTTTACCCCTAAATGAAATCTCTGTCGTTATTTACCCACCCTCTATTTTTTTTTTAAGCAAGATATTTTGAAAACTGTTGGAAACCAGAAGCTTTTGAAATATCCATAGTACAGATACAAAATATACTATGGAATTTTGCTTTTCAAAATTATTTATAAACATCTTTATTGTGGAAGAAATTCAAACATTTTTGGAACTACTGGAGTATGCACTATTGCACTGTTATATGTAACTTTCAGTCATATGGTCAAATCATATCCATATGTAAATTGTATTTACAGTTTTTCCTGCTGAAGTGTACATAGATCTATAGACTAATTTAAATAGTTAAATATGTCCATAGTACGCACATCTGTTTATAATATCTTATATCTTGTCATACTATTCATTCATTCATTTTCCTGTCGGCTTAGTCCCTTTATTAATCCGGGGTCGCCACAGTGGAATGAACCGCCAACTTATCCAGCAAGATTTTACGCAGCAGATGCCCTTCCAGCCGCTACCCATTTCTGGGAAACATCCACACACACACTCATTCTCACTCATACACTACGGACAATTTAGCCTACCCAATTCACCTGTACCGCATGTCTTTGGACTGTGGGGGAAACCGGAGCACCCGGAGGAAACCCACGCGAACGCAGGGAAAACATGCAAACTCCACAAAGAAACGCCAGTTGACCCAGCTGAGGCTCAAACCAGCGACCTTCTTGCTGTGAGGCGACAGCACTACCTACTGCGCCACTGTGTCGCCACTTTTGTCATACTAGTTTAACTTTATTTATATCCGTAATACTACCTCTGTCTGTGTATTGTAACAAATGCACATACTATTTATTTACACTTGCAGCACTTACTTAAATTTGCACTCTGGTTAGAAGCGAACTGCAATTCATTAGCTCATACTCTACATGTGTAATGACAATAAGGTTGAATCTAAACTAATCTAATCAAATCTAATGAATACAGAATAAAAAAATGGGAGAATTATCTCAAATACTAAAGTTTGTGTAACATTAAAATTTACTAAGTTTATTTGGCTAGCGCACATTGTTATTCTTTAGGTGAACAATTTATCCTTAAGTTAATTCGCTTGATTTTTGGTATTGTTTTGGTAAATTTCAATCAAAGTTCATTTCATTCCATGTTTGAAGTGGCGGTACATATCTGATGATGTCAGTTTGATGGCTTTAACCTCATTATTCTTAACCACACCCCTCTTACCAATAGTTTGCTACAAATGAATGGTGCACAAAAAAAGAAAGCCCCGCCCACTACTTAATATTCCATTTCAGTACACCAACATACTGAAACTGGTTGCAGACAATTTATACAGCAGGGGAAGTAGGTATTGAACACGTCCCCATTTTTCTCAGGACACATATTTCTAAACATGCTGTTGACTTGAAATCTTCAACGTATGTTGATGTTGACAACCAAAGAAATCTATATATGCAAAAAAAATAAGACTAATTATTTTGAAAATGAAGTTATGTGTGACAAATTTAAATGGTGCAGGGAAAAATTATTAAACACATGAAGAAAGGGAGCTGTAGAAGCCCAGACAGCAGCTGAAATCTCTCAGTAGATATTCAGCAACCCTCTGCCCTTCGTCTTTGTAAATTAACATTAGCTGCTTCAGTCCAAGATCTATATAATCAGGAGGATGGAGATGAAACCAGGGAGGACTTTTTAGCTAGACAATGATCCAAAACACAGCCAAGGAAACTTTCAAATGCTTTCAGAGAAAGAAAATCAAGCTGTAGAATGGCCCAGCCAATCACCTTACTTGAATCCAATAAAAACACAAAATGAAGCTCTGATTTTATAGATGAGACCCACAGAACCATCAGGATTTTTGCACTCTGAACACGTTGTTCAATACTTATTTTCCTTGCTGAGTGGGCTGAATTTAAACAAACAACTTAAGTTGAGCATTATTTAATGTAATTAGTTTGTTTGAATTCAGCCCATATAAATAGTTTGCAACCAGTTACCTTAAATAAATTGAGTAAATCCAACCATTTTTTTTCAGTGTATGATTCAATTCAATTCAGCTTTATTTGTTTAGCGCTTTTACAATGTAGATTGTGTCAAAGCAGCTTCACATAAATGGATGATCTTTCTCTGTGTTTTGTAATTGAGCAG
Seq C2 exon
TGGCTGTAGACAAGCTGCCAGATTTCTTGGCTGCTCCGAATGGCGCGGATGGAAAAGCGGGTCCTCATCATCAGTGTTCAATCCACCTGAACTGTGAGAGCGTGGAGGTGCTGGAAGACGCTTATTGGGAGGGTCAGCATGGTCGGCCATCCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014101:ENSDART00000144360:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.151
Domain overlap (PFAM):
C1:
PF0159319=Amino_oxidase=FE(17.1=100)
A:
NA
C2:
PF0159319=Amino_oxidase=PD(4.3=11.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]