MmuINT0130058 @ mm10
Intron Retention
Gene
ENSMUSG00000060224 | Pyroxd2
Description
pyridine nucleotide-disulphide oxidoreductase domain 2 [Source:MGI Symbol;Acc:MGI:1921830]
Coordinates
chr19:42733721-42734155:-
Coord C1 exon
chr19:42734083-42734155
Coord A exon
chr19:42733878-42734082
Coord C2 exon
chr19:42733721-42733877
Length
205 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
3' ss Seq
CCTGACCTTTGGCTCTGCAGTGG
3' ss Score
6.81
Exon sequences
Seq C1 exon
GAGTGGCTTCCCGGGGCTTTTGTGAAGAGAATCTCCCAGCTGGACACCCAGTCTCCTGTCACCAAGATCAATG
Seq A exon
GTAAGAGATGTCTGATTGTGTCTGCCCTTTGACATATTGCATAGGAATCTCCAAATTAGGAGAACCCCAGCCACACTGCCCTCTCCTGCCCTGACCCCAGCTTGTCATACTTTGAGACTTCTGGACAAGCAGGTCCTGACTATCGAGGGAGGACCCTGCTAGGCTGGGGAGCTGACCTGACCTGACCTGACCTTTGGCTCTGCAG
Seq C2 exon
TGGCTGTGGACAGGCTGCCAAACTTCCAGGCGGCCCCTAATGCTCCCGGGGACCAGCCCCAAGGTCACCATCAGTGTTCCATCCACCTGAACTGTGAAGACACCCTGCTCCTCCACCAGGCCTTTGAAGATGCCAAGGGTGGCCTGCCTTCCCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060224:ENSMUST00000076505:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.340
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCTTCCCGGGGCTTT
R:
TTTTGGGAAGGCAGGCCAC
Band lengths:
228-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types